Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0180 ATGGGAGTGGTCACTGTTGGAGAATTGAAGACTAGCATCTCAGGGAAGAGGACCTTTCGTCCAAGTTCAAGCATAAGGCATGCCACTGAGTGGCCAATATCTGATGTCTCTAGTGATCTCACCATCGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTTGTTTCCAGGAGTGGAAGGCTTCGGAAAATGTTGTTAGAAACAAAAGATTCAAAAGTTTCGCGCATTAGTCTCCCAAACTTGCCAGGTGGTGCAGAGGCATTTGAGCTGGCTGCCAAATTCTGTTATGGGATCAATGTTGAGTTCACTCTCTCCAATGTTGCCATGCTAAAATGTGTAGCGCATTTCCTAGAAATGACAGAAGAGTTTGCAGAGAAAAACTTGGAGACGCAAGCCGAAGCGTATCTAAAGGAGACAGTGCTCCCAAATATATCAAACACAATATCTGTTCTTCACCGTTGTGAATCTCTTGTTCCCATTTCAGAAGAGATTAGCCTTGTCAGCAGACTAATCAATGCAATTGCAAGCAATGCATGTAAAGAACAACTCACCACTGGTTTGCAAAAACTGGACCACAACTTCCCTTCTAAAACCGCCTCAAACATGGAACCCGAAACACCCTCAGAATGGTGGGGGAAATCTCTCAATGTTCTTAGCCTTGATTTCTTCCAAAGAGTTTTGTCTGCAGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCACATAATTCCCTTCAAGGGATTGTTAGGGACCACCAAGCAGTGAAAGCATGTTTTCCTGACTTGGAAGTACAAAAGAAACAAAGAGTCATTGTTGAAGCAATAGCTGGCTTACTACCCACTCAATCAAGGAAAAGCCTAGTTCCTATGGCATTTCTCTCAAGTTTGTTGAAAGCTGCAATAGCTGCATCAGCATCCACTTCTTGCAGATCTGATTTGGAGAAAAGGATTGGTCTACAACTTGACCAGGCTATTCTTGAAGACATCCTAATCGCAACAAATTCACATCAAAACACACACGGGGCTATTTATGACACGGATTCAATTTTGAGGATTTTTTCCAATTTTCTGAACTTGGACGAGGAGGATGAAGATGATAATAATGGTCACTTGAGAGATGAAAGTGAAATGGTTTATGACTTTGACAGCCCCGGATCTCCAAAACAAAGCTCAATTCTAAAGGTATCCAAATTAATGGACAACTATCTTGCTGAAGTGGCACTAGACCCAAACTTGTTGCCATCAAAGTTCATATCCCTTGCTGAACTACTTCCAGATCATGCACGTATTGTGAGTGATGGGCTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATAAAGGACTCAGAACGGTACCGGCTATGCAAAACCATTGATTGCCAGAAAATGTCTCAAGAAGCATGCAGCCATGCAGCACAGAATGAAAGGCTACCAGTGCAGATGGCAGTTCAGGTTCTATACTTTGAGCAAATAAGGCTCCGCAATGCCATGAATGGAGGGCACAACCAATTGTTCTTTGGAGGAGGACTTAATGGTCCATTCCCTCAACGCTCAGGGAGTGGTGCAGGAAGTGGAGCCATTTCTCCGAGAGACAACTATGCATCAGTGAGAAGGGAGAACCGAGAGCTGAAGCTAGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGACCATGTCAACATGAAGCAGGAGCTAGTGAGGTCTCACCCTGCCAACAAGCTATTCAAATCATTCACCAAAAAACTAAGCAAGCTAAATGCTATGTTTCGGATTAACAGTATTAAGCCAGGTTCTGAGAGTCGCTTCCCTTTTCCTAAGAGAAGGCGTCACTCAGTTTCATGA 1887 0.4298 MGVVTVGELKTSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRLRKMLLETKDSKVSRISLPNLPGGAEAFELAAKFCYGINVEFTLSNVAMLKCVAHFLEMTEEFAEKNLETQAEAYLKETVLPNISNTISVLHRCESLVPISEEISLVSRLINAIASNACKEQLTTGLQKLDHNFPSKTASNMEPETPSEWWGKSLNVLSLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGIVRDHQAVKACFPDLEVQKKQRVIVEAIAGLLPTQSRKSLVPMAFLSSLLKAAIAASASTSCRSDLEKRIGLQLDQAILEDILIATNSHQNTHGAIYDTDSILRIFSNFLNLDEEDEDDNNGHLRDESEMVYDFDSPGSPKQSSILKVSKLMDNYLAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKMSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQLFFGGGLNGPFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVNMKQELVRSHPANKLFKSFTKKLSKLNAMFRINSIKPGSESRFPFPKRRRHSVS* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0180 628 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 621 - -
Gso10g0180 628 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Gso10g0180 628 Pfam BTB/POZ domain 37 140 IPR000210 GO:0005515
Gso10g0180 628 Gene3D Potassium Channel Kv1.1; Chain A 23 144 IPR011333 -
Gso10g0180 628 ProSiteProfiles NPH3 domain profile. 211 504 IPR027356 -
Gso10g0180 628 Coils Coil 545 579 - -
Gso10g0180 628 Pfam NPH3 family 211 480 IPR027356 -
Gso10g0180 628 PANTHER OS12G0117600 PROTEIN 25 621 IPR043454 -
Gso10g0180 628 SUPERFAMILY POZ domain 22 123 IPR011333 -
Gso10g0180 628 SMART BTB_4 38 142 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0180 Gso-Chr10 1885717 1890801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0180 1 454 EF-hand Containing Proteins AT2G47860 59.091 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0180 - - gmx:100807676 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1273 2 15777217 15782332 Gso10g0180 10 1885717 1890801 GST
Gso19g1744 19 46298848 46303433 Gso10g0180 10 1885717 1890801 PCT
Gso3g1778 3 43540489 43544919 Gso10g0180 10 1885717 1890801 PCT
Gso10g0180 10 1885717 1890801 Gso19g1744 19 46298848 46303433 PCT
Gso10g0180 10 1885717 1890801 Gso3g1778 3 43540489 43544919 PCT