LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1756	ATGACAGGGCAAGTGGTGGTGACCAACGGTGGCGGATGCGCTGCTGTCGGGAAGGGCCGGAGAGCCGCCGCCGGCGAAGAGGAGCAGAACCCGGCGTCACCGGTGGCGCTTCTGCTGGCGGCGCTGAGGAAGTCAATGGTGGCCTGCAGCGTGGACAGTCCCGACGATGTAATCTCCGCCGTCCATCATCCCATGGAGATCGGATGGCCCACAAACGTTAAGCATGTTAGTCATGTCACGTTCGATCGCTTCAATGGCTTTCTGGGTCTTCCTCTTGAGTTAGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAGTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGCGTCCCCACTATTCTACTGCTAATGCAAGATCGATTATACTCACAGGATGGCCTAAAGGCTGAAGGCATATTTCGCATTAATCCAGAAAACAGTCAAGAGGAGCATTTGAGGGAGCAGTTGAATAAGGGCATTGTGCCAGATGACATTGATGTCCACTGTTTGGCAGGCCTAATTAAAGCATGGTTCAGGGAACTTCCTTCAGGAGTGCTAGATGGACTTTCCCCTGAGCAAGTTCTTGAGTGCAACACAGAAGAAGAATCTGTTGAGCTTGTGAAACAGCTAAAGCCAACTGAATCAGCCTTGCTCAACTGGGCTATTGATCTCATGTCTGATGTTGTAGCAGAAGAAGATTATAACAAAATGGATGCAAGAAACATTGCTATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTGATGCATGCGGTCCAAGTGATGAATTTACTAAAGACCCTAATATTGAAGACACTTAGAGAACGCGAAGAAACAGCTGCAGCAGGATATTCACCTATGTCATCTCTTTCATCTGATCATCAGTCTGAGGATGACTATGATAGTCAGCAAGAAATGGATACCAGTGGTGAATTGAGAGAGACCAAGTCAGATGATGATCATGATCATGATGTTAACTACAGTCATGCCAGTGAAGAAGAAGGGGAAGCTGATGCATCAGTAAGCGATATAGTGGAATGCTTCTTGAAGCGTTTGGATGAGAAAACAAAAAGATTCTCAGAAGAACCTGCAGGGTATTTGCAAGAGAAGTTAGAGAGCCCCAAGAGTTGCTCCGGCTACAACTTGGAATCTGCTTTAACATTTACTGATATCAAAACTGTGGATTCGTGCTCGAGTCCCTCCTATGAAAATGACTCAAGAACAACTTTGACTGCTGAGGAATCAAATGCTGACACAAGTAGTCCATCAATAGAAAGTACAAGCACCAATGATGTGGAGATGATTGATAAGTTTACAGATTCCGTTTCACTAGTTCCACTGTTTGCATCTAGTTAA	1404	0.4594	MTGQVVVTNGGGCAAVGKGRRAAAGEEEQNPASPVALLLAALRKSMVACSVDSPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQDRLYSQDGLKAEGIFRINPENSQEEHLREQLNKGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEESVELVKQLKPTESALLNWAIDLMSDVVAEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREETAAAGYSPMSSLSSDHQSEDDYDSQQEMDTSGELRETKSDDDHDHDVNYSHASEEEGEADASVSDIVECFLKRLDEKTKRFSEEPAGYLQEKLESPKSCSGYNLESALTFTDIKTVDSCSSPSYENDSRTTLTAEESNADTSSPSIESTSTNDVEMIDKFTDSVSLVPLFASS*	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1756	467	SMART	PBD_5	67	101	IPR000095	-
	Gso3g1756	467	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	112	293	IPR000198	GO:0007165
	Gso3g1756	467	Pfam	P21-Rho-binding domain	66	94	IPR000095	-
	Gso3g1756	467	Pfam	RhoGAP domain	129	263	IPR000198	GO:0007165
	Gso3g1756	467	PANTHER	RHO GTPASE ACTIVATION PROTEIN-RELATED	1	467	-	-
	Gso3g1756	467	ProSiteProfiles	CRIB domain profile.	67	80	IPR000095	-
	Gso3g1756	467	Gene3D	Rho GTPase activation protein	99	291	IPR008936	GO:0007165
	Gso3g1756	467	MobiDBLite	consensus disorder prediction	413	447	-	-
	Gso3g1756	467	SUPERFAMILY	GTPase activation domain, GAP	108	286	IPR008936	GO:0007165
	Gso3g1756	467	CDD	RhoGAP	129	279	-	-
	Gso3g1756	467	PANTHER	MKIAA1688 PROTEIN	1	467	IPR044785	GO:0005096
	Gso3g1756	467	SMART	RhoGAP_3	126	289	IPR000198	GO:0007165
	Gso3g1756	467	MobiDBLite	consensus disorder prediction	296	356	-	-
	Gso3g1756	467	CDD	CRIB	65	95	-	-
	Gso3g1756	467	MobiDBLite	consensus disorder prediction	310	352	-	-
	Gso3g1756	467	Gene3D	CRIB domain	62	98	IPR036936	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1756	Gso-Chr3	43376973	43380069	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1756	-		K20642	gmx:100812700	870.537

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso3g1756	3	43376973	43380069	Gso2g1258	2	15614953	15618285	PCT
	Gso3g1756	3	43376973	43380069	Gso10g0195	10	2031125	2034378	PCT
	Gso2g1258	2	15614953	15618285	Gso3g1756	3	43376973	43380069	PCT
	Gso10g0195	10	2031125	2034378	Gso3g1756	3	43376973	43380069	PCT