Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1750 ATGCTGAGCGTGCTGCGCGTGCACCTTCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTACGTGCTCCTACGCCGACCTGATAAGACCGTTACCACCGATGATTTCCCGGAAACCGCCCCGTTAGACGGCCATTTCTTGCGCTACAAGTGGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCAGGCCGCACTGCAGTGCCTAGGTTGTGTAAAGGCTAAAATACCTGTTGCCAAAAGTTATCACTGCTCTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGACCGTGCTGCAAGTGCAGCTAATGAAAATGGAAATGAAGAAGAAGAGTTATATGGGCGATTTAATAATTCTGGATCTGGATCTGGATCAATCAATACCAGCTTATCTTCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCACCTGTGTATCCAGCAGCTGTGACGCAACGGAGTGGTGGTGAAACTTGGTTTGAAGTTGGACAATTTAAGACGTATACCCCAACAGCTGATGACATTGGACATGTCCTTAAATTCGAGTGTGCTGTAGTTGATTCAGAGACCAAACTTGCTGTAGGGCATGTAAACACTCTACTAACTTCCCGTGTCATTCCTGCTCCCTCGCCTAGCCCGCGCCGACTGATACCTGTTGATGGGATGGGACATTTGGATGCTGATGGGCGTATAACATCTTCAGGAACTTTTACTGTTCTATCATACAACATATTATCTGATGCATATGCCTCAAATGACCTATACAATTACTGCCCTTCGTGGGCTCTTTCCTGGCCATATCGCAGGCAAAATCTGTTACGAGAAATAGTTGGTTACCGTGCAGATATTATTTGTCTTCAGGAGGTTCAAAGTGATCATTATGAAGAATTTTTTTCTCCTGAACTGGACAAACATGGTTATTATGGTCTTTACAAAAAGAAAACAAATGAGGTATACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATAGATTGGTTAAGGATAATGTTGCACTAATAGTTGTTTTAGAAGCAAAAGTTAACAATCAGCCTGTTGATAATCCAGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATGTAAATGTTCACCATGATTTAAAGGATGTCAAACTGTGGCAGGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCAAGTGCAGATATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCATCGCATCCTGATTTAGCAGTTGACCCACTTAATATATTGCGTCCTCACAGCAAGTTGGTTCACCAGTTGCCACTGGTCAGTGCTTATTCGTCTTTTGCTAGAACGGTTGGTCTTGGATTTGAGCAGCATAAAGGGAGACTAGACAATGCAACAAATGAACCTTTATTCACAAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGTTGGAGCTATTGGATGAGGAAAGTTTGAGGAAAGACACAGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTATGTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGTTGA 1809 0.4256 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDFPETAPLDGHFLRYKWYRVQSDKKVAVCSVHPSEQAALQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAANENGNEEEELYGRFNNSGSGSGSINTSLSSSASSASLTNGSAPVYPAAVTQRSGGETWFEVGQFKTYTPTADDIGHVLKFECAVVDSETKLAVGHVNTLLTSRVIPAPSPSPRRLIPVDGMGHLDADGRITSSGTFTVLSYNILSDAYASNDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEEFFSPELDKHGYYGLYKKKTNEVYNGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSIPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKGRLDNATNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIAMLAEFRCCKNRSRR* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1750 602 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 597 - -
Gso3g1750 602 MobiDBLite consensus disorder prediction 113 132 - -
Gso3g1750 602 SUPERFAMILY DNase I-like 248 596 IPR036691 -
Gso3g1750 602 Pfam Endonuclease/Exonuclease/phosphatase family 255 586 IPR005135 GO:0003824
Gso3g1750 602 Gene3D Endonuclease/exonuclease/phosphatase 223 601 IPR036691 -
Gso3g1750 602 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 597 - -
Gso3g1750 602 CDD Deadenylase_CCR4 254 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1750 Gso-Chr3 43322666 43328946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1750 280 462 EF-hand Containing Proteins AT5G54130 24.227 9.11e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1750 K12603 - gmx:100808935 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1750 3 43322666 43328946 Gso3g1750 3 43322666 43328946 ECH
Gso19g1720 19 46078511 46084712 Gso3g1750 3 43322666 43328946 GST
Gso3g1750 3 43322666 43328946 Gso2g1443 2 27797314 27805605 PCT
Gso2g1443 2 27797314 27805605 Gso3g1750 3 43322666 43328946 PCT