Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1720 ATGCTGAGCGTGCTGCGCGTGCACCTTCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTACGTGCTCCTACGCCGACCTGATAAGATCGTTACCACCGACGATGTCCCCGAAACCGCCCCGTTAGACGGCCATTTCTTGCGCTACAAGTGGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCCGGCCACACTGCAGTGCCTAGGTTGTGTAAAGTCTAAAATACCTGTTGCCAAAAGTTACCACTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGACCGTGCTGCAAGTGCAGCCAATGAAAATGGAAATGAGGAAGAAGAGTTATATGGGCGATTTAATAATTCTGGATCTGGATCAATCAATACCAGCTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCACCTGTGTATCCGGCAGCCGTTACGCAACGAAGTGGTGGTGAAACTTGGTTTGAAGTAGGGCAATTTAAGACGTATACCCCAACAGCTGATGACATTGGACATGTCCTTAAATTCGAGTGTACTGTAGTTGATGCAGAGACCAAACTTACTGTAGGGCATGTAAACACTCTACTAACTTCCCGTGTCATTCCTGCTCCCTCGCCTAGCCCGCGCCGACTGATACCTGTTGATGGGATGGGACATTTGGATGCTGATGGGCGTATAACATCTTCAGGAACTTTTACTGTTCTATCATACAACATATTATCTGATGCATATGCCTCAAATGATCTATACAATTACTGCCCTACGTGGGCTCTTTCCTGGCCATATCGTAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGGTTCAAAGTGATCATTATGAAGATTTTTTTTCTCCTGAACTGGACAAACATGGCTATTATGGTTTTTACAAAAGGAAAACAAATGAGGTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAGGATAATATTGCACTAATAGTCGTTTTAGAAGCAAAAGTTATCAATCAGCCTGTTGATAATCCAGGGAAAAGACAGCTTCTTTGTGTAGCAAATACACATGTAAATGTTCACCATGATTTAATGGATGTCAAACTCTGGCAGGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCATCGCATCCTGATTTAGCAGTTGACCCACTTAATATATTGCGACCTCACAGCAAGTTGGTTCACCAGTTGCCACTGGTCAGTGCTTATTCGTCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGCTGGAGTTATTGGATGAGGAAAGTTTGAGGAAAGACACAGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTCTGTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGCTGA 1803 0.4287 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKIVTTDDVPETAPLDGHFLRYKWYRVQSDKKVAVCSVHPSEPATLQCLGCVKSKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASAANENGNEEEELYGRFNNSGSGSINTSLSASASSASLTNGSAPVYPAAVTQRSGGETWFEVGQFKTYTPTADDIGHVLKFECTVVDAETKLTVGHVNTLLTSRVIPAPSPSPRRLIPVDGMGHLDADGRITSSGTFTVLSYNILSDAYASNDLYNYCPTWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEDFFSPELDKHGYYGFYKRKTNEVYNGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNIALIVVLEAKVINQPVDNPGKRQLLCVANTHVNVHHDLMDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSIPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKRRLDDTTNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1720 600 Gene3D Endonuclease/exonuclease/phosphatase 221 599 IPR036691 -
Gso19g1720 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 595 - -
Gso19g1720 600 SUPERFAMILY DNase I-like 246 594 IPR036691 -
Gso19g1720 600 CDD Deadenylase_CCR4 252 593 - -
Gso19g1720 600 Pfam Endonuclease/Exonuclease/phosphatase family 253 584 IPR005135 GO:0003824
Gso19g1720 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1720 Gso-Chr19 46078511 46084712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1720 278 460 EF-hand Containing Proteins AT5G54130 24.227 4.33e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1720 K12603 - gmx:100775270 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1720 19 46078511 46084712 Gso3g1750 3 43322666 43328946 GST
Gso19g1720 19 46078511 46084712 Gso2g1443 2 27797314 27805605 PCT
Gso2g1443 2 27797314 27805605 Gso19g1720 19 46078511 46084712 PCT