Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1599 ATGGATCGTTTTTCTTCTAGTACCATTCTCCCCGAAGCGTTTCAAGGTGCCAAAGATGACTTCACCATGCAGCTTGCATTGGTCTGGAACCAAATCAAAGCGCCACTCATTGTCCCGTTGCTGAGAATAACAGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTCATCGAGAGGGTCTACATGGGCATTGTCATCACTCTGGTGAAGTTGTTTGGGAGAAAGCCAGAGAAACGTTACAAGTGGGAACCGATGAAGGACGACATAGAGTTGGGAAACTCTTCTTACCCAATGGTTCTTGTTCAAGTCCCCATGTACAACGAAAGAGAGGTTTATCAGTTGTCTATTGGAGCAGCATGTGGGCTTTCTTGGCCTTCAGATAGGATCATCATACAAGTCCTTGATGACTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGTAGCTACGTGAAACAATGTGATTGTGTTGCTATCTTTGACGCTGATTTTCAACCAGAGCCTGATTTCCTGTGGCGGACCGTTCCATTCCTCGTGCACAATCCCGAATTAGCCCTCATTCAAGCACGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGTTTCAACGGGACTGCGGGAGTATGGAGAATTTCGGCGCTGAATGAGGCTGGTGGATGGAAGGATAGAACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGGTTAAAAATGAGTTGCCAAGTACTTTCAAGGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGCCCAGCCAATCTTTTTAGGAAAATGGCCATGGAGATCATAAACAACAAGAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACGTTTGTGTTTTATTGCATTGTATTACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCCATCATCACTATTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTGCATCGAACAAAGGCAACAATTATTGGTCTACTTGAGGCCAGTCGAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGGCTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCATTTCTTCATCTTCCTCTTTATCCAATCTTTTGCCTTCCTCATCATGGCATTTGGATATGTTGGCACCATTGTTCCCAACTCCTAG 1602 0.4494 MDRFSSSTILPEAFQGAKDDFTMQLALVWNQIKAPLIVPLLRITVFLCLIMSVMMFIERVYMGIVITLVKLFGRKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMAMEIINNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSIITILNAVGTPRSLHLMVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKAKAGGKAPKKPRFRIGDRIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQSFAFLIMAFGYVGTIVPNS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1599 533 Pfam Glycosyltransferase like family 2 98 332 - -
Gso3g1599 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 373 IPR029044 -
Gso3g1599 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9-LIKE 1 532 - -
Gso3g1599 533 PANTHER - 1 532 - -
Gso3g1599 533 CDD CESA_CaSu_A2 97 333 - -
Gso3g1599 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 314 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1599 Gso-Chr3 41916629 41921601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1599 1 532 Miscellaneous Gene Families AT5G03760 80.488 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1599 K13680 - gmx:100810016 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1599 3 41916629 41921601 Gso3g1599 3 41916629 41921601 ECH
Gso19g1580 19 44721548 44726975 Gso3g1599 3 41916629 41921601 GST
Gso3g1599 3 41916629 41921601 Gso10g0568 10 6426853 6433717 PCT
Gso10g0568 10 6426853 6433717 Gso3g1599 3 41916629 41921601 PCT