Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1580 ATGGATCGCTTTTCTTCCAGTACCATTCTCCCCGAAGCGTTTCAAGGTGCCAAAGATGACTTCACCATGCAGCTTGCATTGGTGTGGAACCAAATCAAAGCGCCACTGATTGTCCCGTTGCTGAGACTAGCAGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTCATTGAGAGAGTCTACATGGGCATTGTCATCACTCTGGTGAAGTTGTTTGGGAGAAAGCCAGAGAAACGTTACAAGTGGGAGCCAATGAAGGACGACATTGAGTTGGGAAACTCTTGTTACCCAATGGTTCTTGTTCAAGTCCCCATGTACAACGAAAGAGAGGTTTATCAGTTGTCTATTGGAGCAGCATGTGGGCTTTCTTGGCCTTCAGATAGGATCATCATACAAGTCCTTGATGACTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGTAGCTACGTGAAACAATGTGATTGTGTTGCTATCTTTGACGCTGATTTTCAACCAGAGCCTGATTTCCTGTGGCGGACCGTTCCATTTCTCGTGCACAATCCCGAATTAGCCCTCATTCAAGCACGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCCGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGTTTCAACGGGACAGCGGGAGTATGGAGAATTTCGGCGCTTAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCCGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGGTTAAAAATGAGTTGCCAAGTACTTTCAAGGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGTCCAGCCAATCTTTTTAGGAAAATGGTCATGGAGATCATAAATAACAAGAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATAAACACGTTTGTGTTTTATTGCATTGTATTACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCCATCATCACTATTCTTAATGCAGTTGGAACTCCAAGGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTGCATCGAACAAAGGCAACGATTATTGGTTTACTTGAGGCAAGTCGAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGACTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGCTATGATATTATGTTTGGGAAAAACCACTTCTTCATCTTCCTCTTTATCCAATCTTTGGCCTTCCTCATCATGGCATTTGGATATGTTGGCACCATTGTTCCCAACTCCTAA 1602 0.4469 MDRFSSSTILPEAFQGAKDDFTMQLALVWNQIKAPLIVPLLRLAVFLCLIMSVMMFIERVYMGIVITLVKLFGRKPEKRYKWEPMKDDIELGNSCYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIINNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSIITILNAVGTPRSLHLMVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKTKAGGKAPKKPRFRIGDRIHLLELGVAFYLFFCGCYDIMFGKNHFFIFLFIQSLAFLIMAFGYVGTIVPNS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1580 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 313 IPR029044 -
Gso19g1580 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9-LIKE 1 532 - -
Gso19g1580 533 PANTHER - 1 532 - -
Gso19g1580 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 96 373 IPR029044 -
Gso19g1580 533 Pfam Glycosyltransferase like family 2 98 332 - -
Gso19g1580 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1580 Gso-Chr19 44721548 44726975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1580 1 532 Miscellaneous Gene Families AT5G03760 80.300 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1580 K13680 - gmx:100782772 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1580 19 44721548 44726975 Gso3g1599 3 41916629 41921601 GST
Gso19g1580 19 44721548 44726975 Gso10g0568 10 6426853 6433717 PCT
Gso10g0568 10 6426853 6433717 Gso19g1580 19 44721548 44726975 PCT