Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1579 ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCATCGGTGGTGAGTTCACCTACTTCATCGAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCGCAGAGGCCTTCGTCTCATGTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAATGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCCTTGACAGAGAGATAGACCTTGCTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACTACTTACCACAGGAAAACTCTTGTACATCTTGCTGCTAAAACATCAACAGTATAA 666 0.4249 MFRFWGSQEQQSQDGSSQSQSWYPPSVVSSPTSSRPVTPTASSSSLSQRPSSHVPPSEAAAVIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQNNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEDMLKLNSPASLLQRIQESANKTDEESENLHQHLLDREIDLAAFLQKYKKLRTTYHRKTLVHLAAKTSTV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1579 221 ProSiteProfiles VPS37 C-terminal domain profile. 141 221 IPR009851 -
Gso3g1579 221 SUPERFAMILY Endosomal sorting complex assembly domain 159 209 IPR037202 -
Gso3g1579 221 Pfam Modifier of rudimentary (Mod(r)) protein 67 209 IPR009851 -
Gso3g1579 221 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 1 221 - -
Gso3g1579 221 Coils Coil 130 157 - -
Gso3g1579 221 MobiDBLite consensus disorder prediction 1 54 - -
Gso3g1579 221 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 1 221 - -
Gso3g1579 221 Gene3D Helix hairpin bin 146 214 IPR029012 -
Gso3g1579 221 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1579 Gso-Chr3 41750143 41753181 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1579 K12185 - gmx:100305851 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1579 3 41750143 41753181 Gso3g1579 3 41750143 41753181 ECH
Gso19g1559 19 44555787 44560485 Gso3g1579 3 41750143 41753181 GST
Gso3g1579 3 41750143 41753181 Gso10g0547 10 6133407 6136411 PCT
Gso10g0547 10 6133407 6136411 Gso3g1579 3 41750143 41753181 PCT