Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0547 ATGTCCACTAAATTTCGGGGATCACAAGAACATCAACATGGTTCTTCTTCTTCCAGCAGCAACACTTCACACGTCCCCCCTGCCCAAGCTGCTGGACTTGTTGCTATTTTGAAGGATAAAAGTGTTGATGAGTTGCGGAAGCTTTTATCTAACAAAGATGTGTATCAGCAGTTTTTAAGTTCACTTGATGAGGTCAAGATTCAGAATAATGTGAATGATGTTCTTTGCAAGGAGAATCTGCAGCTTGCCGATGAAAATCTACGAAAGGAACCTCGTGTTGTGGAACTCAGGAACCAGTATAAAATAATTTGTACAACCGAGTTGGCTGTGGCTCAAGAGAAACTGAATGAGCTTGAGAAGCAGAAAGAGGAAATGTTGAAGTTGAATTCCCCACTATACCTTCTCCAATGGATTCAAGAGGCTATGAATAATACAGAAGAGGAATCTGAAAATCTGCATCAGCAAGTCCTTGACAGAGAGATTGACCTTGGAGCTTTTCTGCAGAAATACAAAAAGCTACGTACTGCTTACCACAGGAAAAGTCTCATACATCTTGCAGCTAGAACATCAAATATATAG 579 0.4059 MSTKFRGSQEHQHGSSSSSSNTSHVPPAQAAGLVAILKDKSVDELRKLLSNKDVYQQFLSSLDEVKIQNNVNDVLCKENLQLADENLRKEPRVVELRNQYKIICTTELAVAQEKLNELEKQKEEMLKLNSPLYLLQWIQEAMNNTEEESENLHQQVLDREIDLGAFLQKYKKLRTAYHRKSLIHLAARTSNI* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0547 192 ProSiteProfiles VPS37 C-terminal domain profile. 112 192 IPR009851 -
Gso10g0547 192 Coils Coil 101 128 - -
Gso10g0547 192 Pfam Modifier of rudimentary (Mod(r)) protein 38 182 IPR009851 -
Gso10g0547 192 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 14 192 - -
Gso10g0547 192 MobiDBLite consensus disorder prediction 1 26 - -
Gso10g0547 192 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 14 192 - -
Gso10g0547 192 SUPERFAMILY Endosomal sorting complex assembly domain 133 180 IPR037202 -
Gso10g0547 192 Gene3D Helix hairpin bin 116 185 IPR029012 -
Gso10g0547 192 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0547 Gso-Chr10 6133407 6136411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0547 K12185 - gmx:100797771 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1559 19 44555787 44560485 Gso10g0547 10 6133407 6136411 PCT
Gso3g1579 3 41750143 41753181 Gso10g0547 10 6133407 6136411 PCT
Gso10g0547 10 6133407 6136411 Gso19g1559 19 44555787 44560485 PCT
Gso10g0547 10 6133407 6136411 Gso3g1579 3 41750143 41753181 PCT