Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1559 ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCACAGAGGCCTTCGTCTCATGTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACCGAGTTAGCTGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCGCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAATAAGACCGACGAGGAATCTGAAAACTTGCACCACAATCTCCTTGACAGAGAGATTGACCTTGGTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAGACTCTCGTACATCTTGCTGCCAAAACATCAACATTATCATTGGTCAAAGATACTTGCCACCAAATTACATAG 699 0.4278 MFRFWGSQEQQSQDGSSQSQSWYPPSVVSSPTSSRPVTPTASSSSLSQRPSSHVPPSEAAAVIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEDMLKLNSAASLLQRIQESVNKTDEESENLHHNLLDREIDLGAFLQKYKKLRTTYHRKTLVHLAAKTSTLSLVKDTCHQIT* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1559 232 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 1 221 - -
Gso19g1559 232 Coils Coil 164 184 - -
Gso19g1559 232 Gene3D Helix hairpin bin 145 216 IPR029012 -
Gso19g1559 232 Coils Coil 130 160 - -
Gso19g1559 232 SUPERFAMILY Endosomal sorting complex assembly domain 162 209 IPR037202 -
Gso19g1559 232 MobiDBLite consensus disorder prediction 1 54 - -
Gso19g1559 232 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 1 221 - -
Gso19g1559 232 Pfam Modifier of rudimentary (Mod(r)) protein 67 209 IPR009851 -
Gso19g1559 232 MobiDBLite consensus disorder prediction 1 55 - -
Gso19g1559 232 ProSiteProfiles VPS37 C-terminal domain profile. 141 224 IPR009851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1559 Gso-Chr19 44555787 44560485 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1559 K12185 - gmx:100779019 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1559 19 44555787 44560485 Gso3g1579 3 41750143 41753181 GST
Gso19g1559 19 44555787 44560485 Gso10g0547 10 6133407 6136411 PCT
Gso10g0547 10 6133407 6136411 Gso19g1559 19 44555787 44560485 PCT