Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1560 ATGTTCAAGCGAATCATGAAGGGAGGGCAGAAGAAGCCCTCCAAGACGGACCCGAGCGATCCGTCGCCCTTGGCTCCGGCGGCGGCGGGTGCGGCAGCCGCTCCGGCGCTGGTGGTTCCTCCGCCGTCGGGCACCATAGAGCCTCTGCCTCTCTTCCGCGACGTGGCGGTCTCGGAGCGGCAGAACCTCTTCATCCGGAAGCTCCAGATATGCTGCCACGTGTTGGACTTCTCCGACACGCTGAAATCCGTTCGGGAGAAGGAAATCAAGAGACAGACTCTAATGGAGCTCGTGGATTTCATCCAATCCGGGTCGGGGAAGATAACGGAGACTTGCCAGGAAGAGATGATCAAAATGGTGTCGGCGAACGTTTTCCGGTGCCTCCCGCCGGCTTCGCACGAGAACACCGGCCAGGAAGCCACCGATCCGGAAGAGGAGGAGCCGTGCCTCGAACCAGCGTGGCCGCACTTACAACTCGTCTACGAGCTTCTCCTCAGATACGTGGTTTCCTCCGACACTGACACAAAGGTCGCAAAACGATATATTGATCATTCTTTTGTTCTCAAACTCCTTGATTTGTTTGACTCCGAGGACCCTCGTGAGCGCGAGTATTTGAAAACCATATTGCACCGTGTGTATGGGAAATTCATGGTTCATCGTCCCTTCATTAGGAAGGGCATTAACAACATATTTTTTCGGTTTATATATGAGACTGAGCGGCATAGTGGTATTGGGGAGCTTCTTGAGATTCTGGGGAGTATTATTAATGGGTTTGCTTTGCCCATGAAGGAGGAGCATAAGTTGTTTCTTGCTAGGGCGCTTCTGCCTCTGCATAAGCCCAAGCCGGTTGGGGTGTACCACCAGCAGTTGTCGTATTGCATTGCGCAGTTTGTGGAGAAGGATTACAAACTCGCGGACACGGTTATTAGGGGTTTGTTGAAGTATTGGCCAGTCACTAATTGCCAGAAGGAGGTGCTCTTCCTTGGGGAACTAGAGGAGGTGCTGGAGGCCACGCAGACCGCGGAGTTCCAACGCTGCATGGTCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTGCAGAACGAGCTCTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTTGAAGCATTGGAGAAAAATATCAAGAGTCATTGGAACCAGGCTGTTCACGGCCTGACTGTGAACGTTCGGAAAATGTTCATAGAAATGGATGCCGAATTGTTTGAAGAGTGTCAGAGGCAGTATGAAGAGAGGGAGGCTAAAGCAAAAGAATTAGAAGAGCAGCGGGAATTGAATTGGAAAAGACTGGCAGATGCAGCTGCACAGAATGGGGTGGATATGGTCACAGCTTAG 1413 0.5117 MFKRIMKGGQKKPSKTDPSDPSPLAPAAAGAAAAPALVVPPPSGTIEPLPLFRDVAVSERQNLFIRKLQICCHVLDFSDTLKSVREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVSANVFRCLPPASHENTGQEATDPEEEEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKGINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLARALLPLHKPKPVGVYHQQLSYCIAQFVEKDYKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQTAEFQRCMVPLFRQVARCLNSSHFQVAERALFLWNNEHIVSLIAQNRTVVLPIIFEALEKNIKSHWNQAVHGLTVNVRKMFIEMDAELFEECQRQYEEREAKAKELEEQRELNWKRLADAAAQNGVDMVTA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1560 470 Coils Coil 428 451 - -
Gso3g1560 470 Gene3D - 57 459 IPR011989 -
Gso3g1560 470 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 49 460 IPR002554 GO:0000159|GO:0007165|GO:0019888
Gso3g1560 470 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 469 - -
Gso3g1560 470 SUPERFAMILY ARM repeat 61 442 IPR016024 -
Gso3g1560 470 MobiDBLite consensus disorder prediction 1 27 - -
Gso3g1560 470 PIRSF PP2A_B56 38 468 IPR002554 GO:0000159|GO:0007165|GO:0019888
Gso3g1560 470 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 469 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1560 Gso-Chr3 41538915 41544568 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1560 K11584 - gmx:100798308 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1560 3 41538915 41544568 Gso3g1560 3 41538915 41544568 ECH
Gso19g1540 19 44330117 44336203 Gso3g1560 3 41538915 41544568 GST
Gso3g1560 3 41538915 41544568 Gso10g0506 10 5575942 5583249 PCT
Gso10g0506 10 5575942 5583249 Gso3g1560 3 41538915 41544568 PCT