Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1540 ATGTTCAAGCGCATCATGAAGGGAGGGCAGAAGAAGCCCTCCAAGACGGACCCGAGCGATCCGTCGCCCTTCGCTCCGGCGGCGGCAGCCGCTCCGGCGCTGGTAGTTCCTCAGCCGTCGGGCACCATAGAGCCCCTCCCGCTCTTCCGCGACGTGGCGGTCTCGGAGCGGCAGAACCTCTTCATCCGAAAGCTCCATATATGCTGCCACGTCTTGGACTTCTCCGACACGCTGAAATCCGTTCGGGAGAAGGAAATCAAGAGACAGACATTGATGGAGCTCGTGGATTTCATCCAATCGGGGTCGGGGAAGATAACGGAGACTTGCCAGGAAGAGATGATCAAAATGGTGTCGGCGAACATTTTTCGGTGCCTCCCGCCGGCGTCGCACGAGAACACCGGCCAGGAAGCCACGGATCCGGAGGAGGAGGAGCCGTGCCTCGAACCGGCGTGGCCGCACTTGCAACTCGTCTACGAGCTTCTCCTCAGATACGTGGTTTCCTCCGACACTGACACAAAGGTTGCAAAACGGTATATCGATCATTCTTTTGTTCTCAAACTCCTTGATTTGTTTGACTCTGAGGACCCTCGTGAGCGTGAGTATTTGAAAACCATATTGCATCGTGTGTACGGGAAATTCATGGTGCATCGTCCCTTCATTAGGAAGGCCATTAACAACATATTTTTTCGGTTTATATATGAGACGGAGCGGCATAGTGGTATTGGGGAGCTTCTCGAGATTCTGGGAAGTATTATTAATGGGTTTGCCCTGCCCATGAAGGAGGAGCATAAGTTGTTTCTTGCGAGGGCGCTTCTGCCTCTGCATAAGCCCAAGCCGGTTGGGGTGTACCACCAGCAGTTGTCGTATTGCATTGCACAGTTTGTGGAGAAGGATTACAAGCTCTCGGATACGGTTATTAGGGGCTTGTTGAAGTATTGGCCTGTCACTAATTGCCAGAAGGAGGTTCTCTTCCTTGGGGAACTGGAGGAGGTGCTGGAGGCCACACAGACCGCAGAGTTCCAACGTTGCATGGTCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGCACACCTTGCAATGCAGGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTTGAAGCATTGGAGAAAAATATCAAGAGTCATTGGAACCAGGCTGTTCACGGCTTGACTGTGAATGTTCGGAAAATGTTTGTAGAAATGGATGCAGAATTGTTTGAAGAGTGTCAGAGGCAGTTTGAAGAGAGGGAGGCTAAAGCAAAAGAATTAGAAGTGCAGAGGGAATTGAATTGGAAAAGACTGGCAGAGGCAGCTTCACAGAATGGGGTGGATATGGTCACAGCTTAG 1422 0.5084 MFKRIMKGGQKKPSKTDPSDPSPFAPAAAAAPALVVPQPSGTIEPLPLFRDVAVSERQNLFIRKLHICCHVLDFSDTLKSVREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVSANIFRCLPPASHENTGQEATDPEEEEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLARALLPLHKPKPVGVYHQQLSYCIAQFVEKDYKLSDTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQTAEFQRCMVPLFRQVARCLNSSHFQAHLAMQVAERALFLWNNEHIVSLIAQNRTVVLPIIFEALEKNIKSHWNQAVHGLTVNVRKMFVEMDAELFEECQRQFEEREAKAKELEVQRELNWKRLAEAASQNGVDMVTA* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1540 473 Coils Coil 431 451 - -
Gso19g1540 473 MobiDBLite consensus disorder prediction 1 24 - -
Gso19g1540 473 PIRSF PP2A_B56 11 471 IPR002554 GO:0000159|GO:0007165|GO:0019888
Gso19g1540 473 Gene3D - 54 462 IPR011989 -
Gso19g1540 473 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 472 IPR002554 GO:0000159|GO:0007165|GO:0019888
Gso19g1540 473 SUPERFAMILY ARM repeat 58 445 IPR016024 -
Gso19g1540 473 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 46 463 IPR002554 GO:0000159|GO:0007165|GO:0019888
Gso19g1540 473 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1540 Gso-Chr19 44330117 44336203 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1540 K11584 - gmx:100798842 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1540 19 44330117 44336203 Gso3g1560 3 41538915 41544568 GST
Gso19g1540 19 44330117 44336203 Gso10g0506 10 5575942 5583249 PCT
Gso10g0506 10 5575942 5583249 Gso19g1540 19 44330117 44336203 PCT