Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1464 ATGTTCACACTCACTTCTCCTTCTTCCAGGGCCTTACCCATGGATTCTCTTCCCAAATTGCGCCACCCTTCTCCATTTCCCACTCCCTTATCCTCTTCCCTCTCCTTCCGCTCTTTACCGCCACCCCATTTTCCTTCGTCGTCGTTTAGGTTACCCTCCATCAGAGCCTCCTCCTCACCCTCCCAAAACGACCCCGCTTTTCGTACCCCGAGAAACACGCCCTCCCTCCCCCCCCTCCTCCAAACCCTAACCTCCTTCCTCTCCCCCCTCCTCGAAACCACCTGCATCGTCATCGCCGCCGCCGCCTTCTTCTTCATGCGCTTCCACCACACGCCCGCCGTCATCGCCGCTCCGCTCACTTCCCCCGCCGCGGAAACCGACACCGCCTTCACCCAGGAGGAAGCCGAGAGGCTTCTCGAAGAGCGTCTGAGCACCAACCCTCGCGATACCGAGGCGCTCCACGCGCTCATGGAGGTCAAAATCAAAGCGCGTAAGATGGACGAAGCGTTCGAGGTTTTGAACCGTCTGATTGAGCTCGAACCGGAGGAGCAGGAGTGGCCGCTCCTGAAGGCAAACATGCACATCTACAACGACGACCACGCCAGCGCGCGCAAACTGTTCGAGGAAATCCTCAAGAAAGACCCGCTCCGCGTGGAAGCGTTTCACGGCCTCGTCATGGCGACTGCGCAGTCCAACGAGCCCTTGAAAAGTTTGTTGAAGAGAGTGGAAGAAGCAATTGAGGTGTGCAAAAAGCAAAAGAAGGATTCCGATGTTAGAGACTTCAGGCTCTTGATTGCGCAGATTAAAGTCATGGAAGGAGATTACACTGAAGCACTCAAGGCTTATCAGGAATTGGTGAAGGAAGAGCCTAGGGATTTTAGACCTTACTTGTGTCAGGGTATTATTTATACTCTCCTTAGGAAGAAAGATGAAGCTGATAAACAATTCAATAAGTTTCGCAGGCTTGTTCCCAAGGACCATCCTTACAAGGACTATTTCGAGGACAACATGTTCGCTACCAAGTTCTTCTCGCAGAAATTGGAGAGGGAGGGAGCTGGTGCTAGGGGCTGA 1071 0.5387 MFTLTSPSSRALPMDSLPKLRHPSPFPTPLSSSLSFRSLPPPHFPSSSFRLPSIRASSSPSQNDPAFRTPRNTPSLPPLLQTLTSFLSPLLETTCIVIAAAAFFFMRFHHTPAVIAAPLTSPAAETDTAFTQEEAERLLEERLSTNPRDTEALHALMEVKIKARKMDEAFEVLNRLIELEPEEQEWPLLKANMHIYNDDHASARKLFEEILKKDPLRVEAFHGLVMATAQSNEPLKSLLKRVEEAIEVCKKQKKDSDVRDFRLLIAQIKVMEGDYTEALKAYQELVKEEPRDFRPYLCQGIIYTLLRKKDEADKQFNKFRRLVPKDHPYKDYFEDNMFATKFFSQKLEREGAGARG* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1464 356 SMART tpr_5 293 326 IPR019734 GO:0005515
Gso3g1464 356 SMART tpr_5 150 183 IPR019734 GO:0005515
Gso3g1464 356 SMART tpr_5 259 292 IPR019734 GO:0005515
Gso3g1464 356 SUPERFAMILY TPR-like 132 324 IPR011990 GO:0005515
Gso3g1464 356 Coils Coil 235 255 - -
Gso3g1464 356 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 16 349 - -
Gso3g1464 356 MobiDBLite consensus disorder prediction 50 74 - -
Gso3g1464 356 Pfam Tetratricopeptide repeat 263 291 IPR019734 GO:0005515
Gso3g1464 356 Gene3D Tetratricopeptide repeat domain 123 337 IPR011990 GO:0005515
Gso3g1464 356 ProSiteProfiles TPR repeat profile. 150 183 IPR019734 GO:0005515
Gso3g1464 356 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 16 349 - -
Gso3g1464 356 MobiDBLite consensus disorder prediction 1 34 - -
Gso3g1464 356 ProSiteProfiles TPR repeat profile. 259 292 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1464 Gso-Chr3 40621890 40623365 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1464 - - gmx:102661172 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1452 19 43399119 43402891 Gso3g1464 3 40621890 40623365 GST
Gso3g1464 3 40621890 40623365 Gso13g1019 13 24565567 24566903 PCT
Gso13g1019 13 24565567 24566903 Gso3g1464 3 40621890 40623365 PCT