Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1452 ATGTTGACACTCACTTCTCCTTCCATGGCCTTATCCATGGATTCTCTTCCCAAATTGCGCCACCCTTCCCCATTTCCCACTCCCTTATCCTCTTCCATCTCCTTCCGATCTTTGCCGCCACCTCACTTTCCCTCTTCCTCCTCCTCCTCGTTTAGGTTACACTCCATCAGACCCTCCTCCCAAAACCACCCCTCGTTTCGCACCCCCTCCCTCCCCCCTCTCCTCCAAACCCTAACCTCCTTCCTCTCCCCCGTCGTCGAAACCACCTGCATCGTCATCGCCGCCGCTGCCTTATTCTTCATGCGCTTCCACCACACACCCCCCGCCATCGCCGCCCCGCTCACTCCCCCCGCCGCCGAGTCCGACACCGCCTTCACCGAGGAGGAAGCCGAGAGTCTTCTCGAAGAGCGTCTCAGCACCAACCCGCGCGACACCGACGCGCTCCACGCGCTCATGGAGGTCAAAATCAGAGCGCGTAAAATGGACGAAGCGTTTGGGGTTTTAGACCGTTTGATTGAGCTTGAACCGGAGGAGCTGGAGTGGCCGCTCCTGAAGGCGAACATGCACATCTACAACGACGACCACGCCAGCGCGCGCGAACTGTTCGAGGAAATCCTCAAGAAAGACCCGCTCCGCGTGGAAGCGTTCCACGGCCTCGTCATGGCGACTTCGCAGTCCAACGAGCCCTTGAAAGGGTTATTGAAGAGGGTGGAAGAAGCAATTGAGGTGTGCAAGAAGCAAAAAAGGGATTCCGATGTTAGAGACTTCAGGCTCTTGATTGCGCAGGTTAAAGTCATGGAAGGGGATTTCTCTGAGGCGCTTAAGGCTTATCAGGAATTAGTCAAAGAAGAGCCTAGGGATTTTAGGCCTTACTTGTGTCAGGGTATTATATATACCCTCCTTAGGAAGAAAGATGAAGCTGATAAACAATTCGACAAGTTTCGCAGGCTTGTTCCAAAGGACCACCCTTACAAGGATTATTTCGAGGACAACATGTTCGCCACCAAGTTCTTCTCGCAGAAATTGGAGAGGGAGGGAGCTGGTGCCAGGGGCTGA 1056 0.5464 MLTLTSPSMALSMDSLPKLRHPSPFPTPLSSSISFRSLPPPHFPSSSSSSFRLHSIRPSSQNHPSFRTPSLPPLLQTLTSFLSPVVETTCIVIAAAALFFMRFHHTPPAIAAPLTPPAAESDTAFTEEEAESLLEERLSTNPRDTDALHALMEVKIRARKMDEAFGVLDRLIELEPEELEWPLLKANMHIYNDDHASARELFEEILKKDPLRVEAFHGLVMATSQSNEPLKGLLKRVEEAIEVCKKQKRDSDVRDFRLLIAQVKVMEGDFSEALKAYQELVKEEPRDFRPYLCQGIIYTLLRKKDEADKQFDKFRRLVPKDHPYKDYFEDNMFATKFFSQKLEREGAGARG* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1452 351 Pfam Tetratricopeptide repeat 258 286 IPR019734 GO:0005515
Gso19g1452 351 Coils Coil 230 250 - -
Gso19g1452 351 MobiDBLite consensus disorder prediction 49 69 - -
Gso19g1452 351 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 19 344 - -
Gso19g1452 351 SUPERFAMILY TPR-like 128 319 IPR011990 GO:0005515
Gso19g1452 351 ProSiteProfiles TPR repeat profile. 254 287 IPR019734 GO:0005515
Gso19g1452 351 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 19 344 - -
Gso19g1452 351 Gene3D Tetratricopeptide repeat domain 116 333 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1452 Gso-Chr19 43399119 43402891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1452 - - gmx:100778644 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1452 19 43399119 43402891 Gso3g1464 3 40621890 40623365 GST
Gso19g1452 19 43399119 43402891 Gso13g1019 13 24565567 24566903 PCT
Gso13g1019 13 24565567 24566903 Gso19g1452 19 43399119 43402891 PCT