Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1019 ATGGAGTCTCTCCCAAAAATTCGTCATTCTCACATCTCACTCAATCACTCACTACTTCAACGAGGTTCTCAGTGCCATCGTTCTTCATTTCCGACACCCTTCTCTTCCCTCTCTCCACCACTCCCTCCATTCTCTCCTATCAGAGTCTCATCTTCACCATCACCGTCACCCAAACCCCAAAACCCCTTAACCCTAAACCTTCTTCTCCCTCCTCTCGTCAAACCCACCTGCATCGCCATAGCCGCGACCGCATTCTTCTTCATGCGCCTCCACTCTCCCCCCGTTGCATTCGCATCGACGCCGGTCGCTCCACCGGAATCCGCCGAGTCGGAAACTCTACCCAACGAAAGCGCCACTGAGGAGCAACTTCGCACCACCGACACCGACGCGCTTCAATCGCTCCTTCAAACCAAGATCAGAGCCCTCGAAATCAACGAAGCGATTCGCGTTTTAGACCGTCTGTCCGAGCTCGAGCCCGAGGAGTCCGAGTACCCGCTCCTAAAGGCTCACCTGCACATGCGCTACGGCGAGCACGAGCTCGCCGCGAACGTGTTCGAGGAATTGCTTCACAGAGATCCGTTCCACGTGGAGGCCTATCGCGGCCTCTTAATGCTGACTTCAGAGACGAACAAGCCAACGGAGGAACTATTGAAGAGAATCGAAGAGGCCGCCGCGAAGGTTTGCGAGGAACAAGAGAGGGATTCCGATGTGAGGGACCTTAAGTTGTTGATTGCGCAGATAAAGGTTATCAATGGGGATTTATCCGAAGCACTGAAGGTGTATGAGGAGCTTGTTAAGGAAGAGCCTAAGGATTTTAGACCTTACTTGTGTCAGGGTATTGTGTATTCCATGCTGAGAAAGAAGGATGAAGCTGAGAAACAGTTTGAGAAGTATCGTGCTCTTGTCCCAGAGGATCATCCTTATAAGCATCATTTTGAGGAAAATACTCAGTTTTTGGAGAGGAGAGGAGTAGGTGGTGCAAAGAGCTGA 990 0.5162 MESLPKIRHSHISLNHSLLQRGSQCHRSSFPTPFSSLSPPLPPFSPIRVSSSPSPSPKPQNPLTLNLLLPPLVKPTCIAIAATAFFFMRLHSPPVAFASTPVAPPESAESETLPNESATEEQLRTTDTDALQSLLQTKIRALEINEAIRVLDRLSELEPEESEYPLLKAHLHMRYGEHELAANVFEELLHRDPFHVEAYRGLLMLTSETNKPTEELLKRIEEAAAKVCEEQERDSDVRDLKLLIAQIKVINGDLSEALKVYEELVKEEPKDFRPYLCQGIVYSMLRKKDEAEKQFEKYRALVPEDHPYKHHFEENTQFLERRGVGGAKS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1019 329 SUPERFAMILY TPR-like 143 305 IPR011990 GO:0005515
Gso13g1019 329 MobiDBLite consensus disorder prediction 110 125 - -
Gso13g1019 329 Pfam Tetratricopeptide repeat 167 204 - -
Gso13g1019 329 Pfam Tetratricopeptide repeat 245 304 - -
Gso13g1019 329 SMART tpr_5 272 305 IPR019734 GO:0005515
Gso13g1019 329 SMART tpr_5 162 195 IPR019734 GO:0005515
Gso13g1019 329 SMART tpr_5 238 271 IPR019734 GO:0005515
Gso13g1019 329 MobiDBLite consensus disorder prediction 100 125 - -
Gso13g1019 329 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 325 - -
Gso13g1019 329 Gene3D Tetratricopeptide repeat domain 102 323 IPR011990 GO:0005515
Gso13g1019 329 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1019 Gso-Chr13 24565567 24566903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1019 - - gmx:100812214 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1452 19 43399119 43402891 Gso13g1019 13 24565567 24566903 PCT
Gso3g1464 3 40621890 40623365 Gso13g1019 13 24565567 24566903 PCT
Gso13g1019 13 24565567 24566903 Gso19g1452 19 43399119 43402891 PCT
Gso13g1019 13 24565567 24566903 Gso3g1464 3 40621890 40623365 PCT