Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1456 ATGAGAACAGAATCAAAGAAGACATCTACGTCTTCGTGGCCAAAATTAGCCAAGTGGCTCAATATAACGAGTAGTGCTGAGAAGTTTCGCTCAGACTATGATGCAGCAACAACAGCAACTGCGAAGGAAAGGAGAAAGAGTTGTTCCGACCAAGATCGTTACGTCGACGTACCGGATGATTTATCAGAGGGGTGGATGATGGATTCTACAAGCGGAATGAAGAAAAAATCAGCTCCTGGCACTGGGGGTCTGGAACTTAGGATGTTCGTGGGGACGTGGAATGTCGGAGGGAAGTCACCGAACGAAGGCTTGAATTTGAGGAATTGGCTTACGTGTCCTTCCCCAGCTGACATCTATGTTATAGGGTTCCAAGAAATTGTACCGCTAAATGCGGGGAACGTGCTTGGGCCGGAGGACAGTGGCCCAGCAGCGAAGTGGCTGGCCCTTATTCGTGAAGCCTTGAACACCAACAAGTGCGACCATGAAATGTCACACTATTACACCAGCAAGAAGTGTAGGCAGAATTTTTCGGAATTCCTCTCTTTAGATGAGGAGTTGGATAATAATGGAGAAAATTATCGTAAGAGTTCACGACGCTATTGCTTAGCAGCAAGCAAGCAAATGGTTGGTATATTCTTGTCCGTGTGGGTACGAGCGGATCTTTGCAACCATGTTACCAATTTAAAAGTCTCAAGTGTTGGCAGAGGCATCATGGGCTATCTTGGAAATAAGGGTTCAACATCAATTAGCATGACATTGTACAACACCACCTTCTGTTTCGTTTGCACCCACTTGGCCTCTGGGGAGAAATTTGGTGATGAGTTGCGAAGGAACTTGGACGTCTCGGAAATCTTGAAGAAAACTAAGTTTTGTCACTCGTTTAAATCTCTTGTTCATCCACTCTCTCCTGAAAGCATACTAGAACACGATAATATTATTTGGCTTGGCGATTTGAATTATCGGCTAGCTGCTGGCTACGATGACACACATGAACTACTAAAGAAGAATAATTGGCAGGCATTACTAGAAAAGGATCAGCTAAGGATAGAGCAGAAAGCTGGTAGAGTATTCAATGGTTGGAATGAAGGGAACATATACTTTGCTCCTACTTATAAATACTTGACCAATTCTGACCACTATGTTGCCCAATCCTCCCAATCCAAGGAAAAACGACGAACTCCTGCTTGGTGTGATCGAATATTGTGGAAAGGGGAAGGCCTGAATCAGATGTGGTATGTACGAGGAGAGTCCAGATTCTCAGATCACAGGCCAGTGTATTCACTATTCTCTGTTCAAGTTGACATGAAAAGCAAGAATATAGTTCCCTCTACTGCCACAATGCCTATTTGTTGTCCCTTAAAACCGTTGACAAATTCTTCGTTGTCATCGACTTGTTGCGCTACGAAAGTCCAGGCAGAAGAGCAACTCTTGCTGCTAACTAGGGCACAAAGTTGCTTAGACACCGTACCTAGGTTTTGA 1479 0.4442 MRTESKKTSTSSWPKLAKWLNITSSAEKFRSDYDAATTATAKERRKSCSDQDRYVDVPDDLSEGWMMDSTSGMKKKSAPGTGGLELRMFVGTWNVGGKSPNEGLNLRNWLTCPSPADIYVIGFQEIVPLNAGNVLGPEDSGPAAKWLALIREALNTNKCDHEMSHYYTSKKCRQNFSEFLSLDEELDNNGENYRKSSRRYCLAASKQMVGIFLSVWVRADLCNHVTNLKVSSVGRGIMGYLGNKGSTSISMTLYNTTFCFVCTHLASGEKFGDELRRNLDVSEILKKTKFCHSFKSLVHPLSPESILEHDNIIWLGDLNYRLAAGYDDTHELLKKNNWQALLEKDQLRIEQKAGRVFNGWNEGNIYFAPTYKYLTNSDHYVAQSSQSKEKRRTPAWCDRILWKGEGLNQMWYVRGESRFSDHRPVYSLFSVQVDMKSKNIVPSTATMPICCPLKPLTNSSLSSTCCATKVQAEEQLLLLTRAQSCLDTVPRF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1456 492 Pfam Endonuclease/Exonuclease/phosphatase family 91 422 IPR005135 GO:0003824
Gso3g1456 492 SMART i5p_5 84 437 IPR000300 GO:0016791|GO:0046856
Gso3g1456 492 Gene3D Endonuclease/exonuclease/phosphatase 67 447 IPR036691 -
Gso3g1456 492 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 8 11 481 - -
Gso3g1456 492 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 11 481 IPR045849 GO:0004445|GO:0046855
Gso3g1456 492 SUPERFAMILY DNase I-like 85 437 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1456 Gso-Chr3 40559619 40566285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1456 86 433 Acyl Lipid Metabolism Gene Families AT1G65580 29.219 2.68e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1456 - - gmx:100800223 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1446 19 43331751 43343649 Gso3g1456 3 40559619 40566285 GST
Gso3g1456 3 40559619 40566285 Gso10g0391 10 4135230 4141981 PCT
Gso10g0391 10 4135230 4141981 Gso3g1456 3 40559619 40566285 PCT