Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1446 ATGAGAACAGAGTCAAAGAAGATATCTAAGTCTTCGTGGCCAAAATTAGCCGTGAGAAAGTGGCTCAATATAAAGAGTAGTGCTGAGCGGTTTCACTCAGACTATGATGCAACAACAGCAATTGCGAAGGAAAGGAGAAGGAGTTGTTCCGACCGAGATCGTTACGTCGTCGTACCGGATGATTTATCAGAGGGGTGGGTGATGGATTCTACAAGCGGAATGAAGAAGAAATCAGCTCCTGGTCCTGGCACTGGGGGTCCAGACCTCAGGATGTTCGTGGGGACGTGGAATGTCGGAGGGAAGTCACCGAACGAAGGCTTCAATTTGAGGAATTGGCTTACGTGTCCTTCCCCAGCTGACATCTATATTATAGGGTTCCAAGAAATTGTACCGCTAAATGCGGGGAACGTGCTGGGGCCGGAGGACAGTGGGCCAGCAGCGAAGTGGCTGGGGCTTATTCGTGAAGCCTTGAACAGCAACGAGGAGTTGGATAATACTGGACAAAACTCTCCCAAGAGTTCACCACGCTATTGCTTAGCAGCAAGCAAGCAAATGGTTGGCATCTTCTTGTCCGTGTGGGTACGAGCTGATCTTTGCAACCATGTCACCAATTTGAAAGTATCTTGCGTTGGCAGAGGCATCATGGGCTATCTTGGAAATAAGGGATCAACATCAATTAGCATGACATTGTACAACACCACATTCTGCTTCGTTTGCACCCACTTGACTTCTGGGGAGAAATTTGGTGACGAGTTGCGAAGGAACTTGGACGTCTCCGAAATCTTGAAGAAAACTAAGTTTTATCACTCGTTTAAGTCTCTTGCTCATCCACTCCCTCCTGAAAGCATACTAGAACACGATAATATTATTTGGCTTGGCGATTTGAATTATCGGCTAGCTTCTGGCTACGATGACACACATGAACTACTAAAGAAGAATAATTGGCAGGCATTACTAGAAAAGGATCAGTTAAGGATAGAGCAGAAAGCTGGTCGAGTATTCAAAGGTTGGAATGAAGGGAACATATACTTTGCTCCCACTTACAAATACTTGACCAATTCTGACCACTATGTTGCCCAATCCTCCAAATCCAAGATAAAACGACGGACTCCTGCTTGGTGCGATCGAATATTGTGGAAAGGGGAAGGCCTCAATCAAATGTGTTATGTACGTGGAGAGTCCAAATTCTCAGACCACAGGCCAGTGTATTCACTATTCTCGGTTCAAGTGGACATGAAAAGCAAGAATATAGCTCCCTCTACTGCCACTATGCCTAGGTGTTGTCCCTTAAAACCGTTGACAAATTCTTCGTTGTCATCGACTTGTTGCACTGCTAAAGTCCAAGCAGAAGAGCAACTCTTGCTGCTAACAAGAGCACAAAGTTGCATAGACACCGTTCCAAGGTTTTGA 1410 0.4567 MRTESKKISKSSWPKLAVRKWLNIKSSAERFHSDYDATTAIAKERRRSCSDRDRYVVVPDDLSEGWVMDSTSGMKKKSAPGPGTGGPDLRMFVGTWNVGGKSPNEGFNLRNWLTCPSPADIYIIGFQEIVPLNAGNVLGPEDSGPAAKWLGLIREALNSNEELDNTGQNSPKSSPRYCLAASKQMVGIFLSVWVRADLCNHVTNLKVSCVGRGIMGYLGNKGSTSISMTLYNTTFCFVCTHLTSGEKFGDELRRNLDVSEILKKTKFYHSFKSLAHPLPPESILEHDNIIWLGDLNYRLASGYDDTHELLKKNNWQALLEKDQLRIEQKAGRVFKGWNEGNIYFAPTYKYLTNSDHYVAQSSKSKIKRRTPAWCDRILWKGEGLNQMCYVRGESKFSDHRPVYSLFSVQVDMKSKNIAPSTATMPRCCPLKPLTNSSLSSTCCTAKVQAEEQLLLLTRAQSCIDTVPRF* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1446 469 Gene3D Endonuclease/exonuclease/phosphatase 83 425 IPR036691 -
Gso19g1446 469 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 9 458 IPR045849 GO:0004445|GO:0046855
Gso19g1446 469 Pfam Endonuclease/Exonuclease/phosphatase family 94 399 IPR005135 GO:0003824
Gso19g1446 469 SUPERFAMILY DNase I-like 87 413 IPR036691 -
Gso19g1446 469 SMART i5p_5 87 414 IPR000300 GO:0016791|GO:0046856
Gso19g1446 469 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 8 9 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1446 Gso-Chr19 43331751 43343649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1446 88 410 Acyl Lipid Metabolism Gene Families AT1G65580 30.189 1.14e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1446 - - gmx:100777569 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1446 19 43331751 43343649 Gso3g1456 3 40559619 40566285 GST
Gso19g1446 19 43331751 43343649 Gso10g0391 10 4135230 4141981 PCT
Gso10g0391 10 4135230 4141981 Gso19g1446 19 43331751 43343649 PCT