Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1341 ATGAAGCAGTCACGTCGCCGGCAGAGGACTCTGCTCCTCGCTCTGCTCTTTCTCTCCGTCGTTTCTCCGCTCGTTTTCGTCTCTCACCACCTCAACACCATCACTCCCGACGGACGACGAGATTTTCTTGATGAGTTATCGAGTTTTACGCATAGGACAGACCCTTTAAATGCAATTGAACAGGAAGGTGCTGAAGAATTAGAAGAGCCAAAAGAAATTGTTTATAAAGAAGAGGATTTTGTTTCAACAAATAGTTACATTTTGCAAAAGACTAATGATACTGAGGGATCTAAAAGTGAGGGGTACAGAAATAACACTTTGGAAAGAAATGAATTCGACCAGCACAAAAGACAAAACCAGGAAGCTCAACAAAAAGGATTACTCTCCACGGATGGGGATGTGAATATATTCAATACAACAGTCACACATAATCAGAATATACACACTCATTTTCAAAGAGTGACAGATGAGAATGTTGAAGTGACAGGAAACCAATCTGTTCCAAAAGCAACCCAACATCGTCAGAGTTCATGCCCTCAGTCTCAGAGAGTGACAAATCAGAAGGTTTTGGAGATTAAGGATCAAATTATTAGAGCCAGAGCATACTTGGGGTTTGCTACACCAAGCAGCAACTCACACTTGGTGAAGGAGTTGAAGCTGAGAATTAAAGAGATGGAACGTGCTGTTGGAGAAGCTACTAAGGATTCAGAGCTGTCAAGGAGTGCTTTGCAGAAAACAAGACACATGGAAGCTTCACTGTCTAAAGCCAACTGTGTTTTCCCAGACTGCACTGCTATGGCAGCTAAGCTCCGTGCAATGAATCATAATGCTGAAGAGCAAGTTCATTCTCATCAACGTGAAGCAACACATCTTGTTCATCTTGCTGCAAGGACCACCCCAAAAGGTCTTCACTGTCTTTCTATGCAGCTAACTGCTGATTACTTTGCCCTGAAACCTGAGGACCGGAAGCTTCCAAATGAAAATAAGATTCATGATCCAAAACTTTATCATTATGCTGTCTTCTCTGACAATCTTCTAGCATGTGCTGTGGTTGTTAACTCCACTGTCTCTAATGCCAAGAAACAGGAGAAACTTGTTTTCCATGTAGTAACCAATTCACTCAACTTTCCTGCAATCTGGATGTGGTTCTTATTAAACCCTCCTGGCAAAGCCACAGTCCACATACAAAGCATTGAGAACTTTGAATGGTTGCCCAAGTACAATACATTCAACAAACATAATTCCAGTGATCCAAGATATACTTCTGAGTTGAACTACCTGCGTTTCTACTTGCCAGATATCTTCCCTACTCTAAATAAGATTCTGTTCTTTGATCATGATGTGGTGGTGCAACAAGATCTCAGTGGACTATGGAATGCCAATATGAAAGGAAAAGTAATTGCAGCAGTGGGCACTTGTCAGGAAGGTGGAACCTCATTTCATAGGATGGATATGTTCATAAACTTCTCAGATCCATTCATTGCAAAGAGGTTTGATGTCAATGCTTGTACATGGGCATTTGGGATGAACTTGTTTGATTTACAACAGTGGAGGAGACATAATTTAACTGCTCTCTACCACAGATATTTGCAAATGGGTTCCAAGAGACCATTGTGGAACATTGGAAGTCTGCCTTTAGGCTGGCTCACTTTCTATAACAAGACTAAGGTTTTGGACAGACGGTGGCACATTCTTGGCCTTGGTTATGACTCAGTTGTCGATAAAAACGAGATTGAGCGAGCTGCCATTATACACTACGATGGAATTAGGAAACCGTGGTTGGACATTGCAATGGGAAGATACCGAAGTTACTGGACCAAATATTTGAACTTTGACCTCCCTATTTTGCAACGTTGCAATCTCCAGGCGTAG 1872 0.4183 MKQSRRRQRTLLLALLFLSVVSPLVFVSHHLNTITPDGRRDFLDELSSFTHRTDPLNAIEQEGAEELEEPKEIVYKEEDFVSTNSYILQKTNDTEGSKSEGYRNNTLERNEFDQHKRQNQEAQQKGLLSTDGDVNIFNTTVTHNQNIHTHFQRVTDENVEVTGNQSVPKATQHRQSSCPQSQRVTNQKVLEIKDQIIRARAYLGFATPSSNSHLVKELKLRIKEMERAVGEATKDSELSRSALQKTRHMEASLSKANCVFPDCTAMAAKLRAMNHNAEEQVHSHQREATHLVHLAARTTPKGLHCLSMQLTADYFALKPEDRKLPNENKIHDPKLYHYAVFSDNLLACAVVVNSTVSNAKKQEKLVFHVVTNSLNFPAIWMWFLLNPPGKATVHIQSIENFEWLPKYNTFNKHNSSDPRYTSELNYLRFYLPDIFPTLNKILFFDHDVVVQQDLSGLWNANMKGKVIAAVGTCQEGGTSFHRMDMFINFSDPFIAKRFDVNACTWAFGMNLFDLQQWRRHNLTALYHRYLQMGSKRPLWNIGSLPLGWLTFYNKTKVLDRRWHILGLGYDSVVDKNEIERAAIIHYDGIRKPWLDIAMGRYRSYWTKYLNFDLPILQRCNLQA* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1341 623 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 620 IPR029044 -
Gso3g1341 623 PANTHER HEXOSYLTRANSFERASE 1 622 - -
Gso3g1341 623 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 338 612 IPR029044 -
Gso3g1341 623 Coils Coil 267 287 - -
Gso3g1341 623 Pfam Glycosyl transferase family 8 305 597 IPR002495 GO:0016757
Gso3g1341 623 Coils Coil 215 235 - -
Gso3g1341 623 Coils Coil 105 125 - -
Gso3g1341 623 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 1 622 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1341 Gso-Chr3 39300250 39306156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1341 1 623 Glycosyltransferase AT1G06780 49.062 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1341 K13648 - gmx:100811619 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1343 19 42130088 42136979 Gso3g1341 3 39300250 39306156 GST
Gso3g1341 3 39300250 39306156 Gso2g1172 2 14634340 14639858 PCT
Gso3g1341 3 39300250 39306156 Gso10g0276 10 2908006 2913249 PCT
Gso2g1172 2 14634340 14639858 Gso3g1341 3 39300250 39306156 PCT
Gso10g0276 10 2908006 2913249 Gso3g1341 3 39300250 39306156 PCT