Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1343 ATGAAGCGATCGGGTCGGTGGCAGAGGACTCTGATCCTCGCTCTTCTCTTTCTCTCCCTCGTTGCTCCGCTCGTTTACGTCTCTCACCTCCTCAACACTCTCACTTCCGACGGACGACGAGATTTTCTTGATGATTTATCGAGTTTTACACATAGGTCAGATCCTTTAAATGCAATTGAACAGGAAGGTGCTGAAGAATTAGAAGAGCCAAAGGAAATTGTTTATAAAGAAGAAGATTTTGATTCAACAAATAGTTACATTTTGCAAAAGACTAATGATACTGCGGCATCTAAAAGTGAGGGGTACAGAAATAACACTTTGGAAAGAAATGAATTCGACCAGGACAAAAAACAAGGCCAGGAAGCTCAGCAAAAAGGATTATTCTCCATGGACGGGGATGTGAATGTATTTAATACAACTGTCACACTTAAGCAGAATATGCACACTCAGTCTCAAAGAATGACAGATGTGAATGTTGAAGTGATAGATAAGAAATCTAGTCCAAAAGCAATCCAACATCGTCAGAGTTCACGCTCTCAGTCTCAGAGAGTGACAAATCAGAAGGTTTTGGAGATTAAGGATCAAATTATTAGAGCCAGAGCATACTTGGGGTTTGCTCCTCCAGGCAGCAACTCACACTTGATGAAGGAGTTGAAGCTGAGAATTAAAGAGATGGAACGTGCTGTTGGAGAAGCTACTAAGGATTCAGATCTGTCAAGGAGTGCTTTGCAGAAAATGAGACACATGGAGGCTTCACTGTCTAAAGCCAACCGTGCTTTCCCAGACTGCACTGCTATGGCAGCTAAGCTCCGTGCAATGAATCATAATGCTGAAGAGCAAGTTCGTTCTCATCAACACGAAGGAACATATCTTATTCATCTTGCTGCAAGGACCACCCCAAAAGGTCTTCACTGTCTTTCTATGCAGCTAACTGCTGATTACTTTGCCCTGAAACCCGAGGACCGGAAGCTTCCAAATGAAAACAAGATTCATGATCCAAAACTTTATCATTATGCTGTCTTCTCTGACAATCTTCTGGCATGTGCTGTGGTTGTTAACTCCACTGTCTCTAATGCCAAGAAAAAGGAGAAACTTGTTTTCCATGTAGTGACCAATTCACTCAACTTTCCTGCAATCTGGATGTGGTTCTTATTAAACCCTCCTGGCAAAGCCACAGTCCACATACAAAGCATAGAGAACTTTGAATGGTTGCCCATGTACAATACATTCAACAAACATAATTCTAGTGATCCAAGATATACTTCTGAGTTGAACTACCTGCGTTTCTACCTGCCAGATATCTTCCCTACTCTAAATAAGATTCTGCTCTTTGATCACGATGTGGTGGTGCAACAAGATCTCAGTGGACTATGGAATGCCAATTTGAAAGGAAAAGTAATTGCAGCAGTGGGCACCTGTCAGGAAGGTGGAACCTCATTTCATAGGATGGATATGCTCATAAACTTCTCAGATCCATTCATTGCAGAGAGGTTTGATGCCAATGCTTGCACATGGGCATTTGGGATGAACTTGTTTGATTTACAACAGTGGAGGAGACATAATTTAACCGCTCTCTATCACAGATATTTGCAAATGGGTTCCAAGAGGCCGTTGTGGAACATTGGAAGTCTGCCTTTAGGCTGGCTCACTTTCTATAACAAGACTAAGGTTTTGGACAGACGGTGGCACATTCTTGGCCTTGGTTATGACTCAGGTGTCGATAAAAACGAGATTGAAGGGGCTGCCGTTATACACTACGATGGAATTAGGAAACCATGGTTGGACATTGCAATGGGAAGATACAGAAGTTATTGGACCAAATATATGAACTTTGACCTCCCTATTTTGCAACGTTGCAATCTCCAGGCGTAG 1872 0.4231 MKRSGRWQRTLILALLFLSLVAPLVYVSHLLNTLTSDGRRDFLDDLSSFTHRSDPLNAIEQEGAEELEEPKEIVYKEEDFDSTNSYILQKTNDTAASKSEGYRNNTLERNEFDQDKKQGQEAQQKGLFSMDGDVNVFNTTVTLKQNMHTQSQRMTDVNVEVIDKKSSPKAIQHRQSSRSQSQRVTNQKVLEIKDQIIRARAYLGFAPPGSNSHLMKELKLRIKEMERAVGEATKDSDLSRSALQKMRHMEASLSKANRAFPDCTAMAAKLRAMNHNAEEQVRSHQHEGTYLIHLAARTTPKGLHCLSMQLTADYFALKPEDRKLPNENKIHDPKLYHYAVFSDNLLACAVVVNSTVSNAKKKEKLVFHVVTNSLNFPAIWMWFLLNPPGKATVHIQSIENFEWLPMYNTFNKHNSSDPRYTSELNYLRFYLPDIFPTLNKILLFDHDVVVQQDLSGLWNANLKGKVIAAVGTCQEGGTSFHRMDMLINFSDPFIAERFDANACTWAFGMNLFDLQQWRRHNLTALYHRYLQMGSKRPLWNIGSLPLGWLTFYNKTKVLDRRWHILGLGYDSGVDKNEIEGAAVIHYDGIRKPWLDIAMGRYRSYWTKYMNFDLPILQRCNLQA* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1343 623 MobiDBLite consensus disorder prediction 165 185 - -
Gso19g1343 623 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 338 612 IPR029044 -
Gso19g1343 623 MobiDBLite consensus disorder prediction 108 129 - -
Gso19g1343 623 Pfam Glycosyl transferase family 8 305 597 IPR002495 GO:0016757
Gso19g1343 623 PANTHER HEXOSYLTRANSFERASE 1 622 - -
Gso19g1343 623 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 620 IPR029044 -
Gso19g1343 623 Coils Coil 267 287 - -
Gso19g1343 623 Coils Coil 215 235 - -
Gso19g1343 623 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 1 622 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1343 Gso-Chr19 42130088 42136979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1343 1 623 Glycosyltransferase AT1G06780 48.906 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1343 K13648 - gmx:100793193 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1343 19 42130088 42136979 Gso3g1341 3 39300250 39306156 GST
Gso19g1343 19 42130088 42136979 Gso2g1172 2 14634340 14639858 PCT
Gso19g1343 19 42130088 42136979 Gso10g0276 10 2908006 2913249 PCT
Gso2g1172 2 14634340 14639858 Gso19g1343 19 42130088 42136979 PCT
Gso10g0276 10 2908006 2913249 Gso19g1343 19 42130088 42136979 PCT