Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1340 ATGGCAACAATCATCGCCGGCACCCCAACTACATCAATCACTCGCACAGGTCATGTGCTCAAACGACCTGTTGGGGCCTCATCCTCTACCGTTCTTGGATTGCCAGCAATGGCCAAGGCGGGGAGAGTGAGGTGCTCCATGGAGGAAAAGCCTTCAAGCAGCTCAAACCTAGGGATGGGGGCATCCTTGTTAGCAGCTGCAGCTGCCGCAACCATGTCAAGCCCAGCAGCCATGGCTTTGGTTGATGAGAGACTCAGCACTGAAGGAACTGGGCTTCCCTTTGGGCTTAGCAACAACCTTCTTGGTTGGATCCTGTTTGGTGTCTTTGGTCTCATATGGGCTCTCTTCTTTGTCTACACTTCCACCCTTGAAGAGGATGAAGAGTCTGGATTGTCCCTCTAA 402 0.5274 MATIIAGTPTTSITRTGHVLKRPVGASSSTVLGLPAMAKAGRVRCSMEEKPSSSSNLGMGASLLAAAAAATMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALFFVYTSTLEEDEESGLSL* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1340 133 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 133 - -
Gso3g1340 133 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 133 IPR009806 GO:0009507|GO:0009523|GO:0015979
Gso3g1340 133 Pfam Photosystem II reaction centre W protein (PsbW) 1 133 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1340 Gso-Chr3 39298450 39299722 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1340 K02721 - gmx:100526966 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1342 19 42127794 42129076 Gso3g1340 3 39298450 39299722 GST
Gso3g1340 3 39298450 39299722 Gso2g1173 2 14640690 14642032 PCT
Gso3g1340 3 39298450 39299722 Gso10g0275 10 2906050 2907349 PCT
Gso2g1173 2 14640690 14642032 Gso3g1340 3 39298450 39299722 PCT
Gso10g0275 10 2906050 2907349 Gso3g1340 3 39298450 39299722 PCT