Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1342 ATGGCAACCATCATCGCCGGCATCCCAACTACATCGATCACTCGCGCAGGTCTTGTGCTCAAACGACCTGTTGGAGCCTCGTCCTCTACCGTTCTTGGATTGCCAGCAATGGCTAAGGCAGGGAAAGTGAGGTGCTCCATGGAGGAAAAGCCTTCAAGCAGCTCAAATATAGGGATGGGGGCATCCTTGTTAGCAGCTGCAGTTGCCGCAACCATGTCAAGCCCAGCCATGGCTTTGGTGGATGAGAGACTCAGCACTGAAGGAACCGGGCTTCCCTTTGGGCTTAGCAACAACCTCCTTGGTTGGATCCTGTTTGGTGTCTTCGGTCTTATATGGGCTCTCTACTTTGTCTACGCTTCCACCCTTGAAGAGGATGAAGAGTCTGGATTGTCCCTCTAA 399 0.5263 MATIIAGIPTTSITRAGLVLKRPVGASSSTVLGLPAMAKAGKVRCSMEEKPSSSSNIGMGASLLAAAVAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASTLEEDEESGLSL* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1342 132 Pfam Photosystem II reaction centre W protein (PsbW) 1 132 IPR009806 GO:0009507|GO:0009523|GO:0015979
Gso19g1342 132 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 132 IPR009806 GO:0009507|GO:0009523|GO:0015979
Gso19g1342 132 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1342 Gso-Chr19 42127794 42129076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1342 K02721 - gmx:100306223 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1342 19 42127794 42129076 Gso3g1340 3 39298450 39299722 GST
Gso19g1342 19 42127794 42129076 Gso2g1173 2 14640690 14642032 PCT
Gso19g1342 19 42127794 42129076 Gso10g0275 10 2906050 2907349 PCT
Gso2g1173 2 14640690 14642032 Gso19g1342 19 42127794 42129076 PCT
Gso10g0275 10 2906050 2907349 Gso19g1342 19 42127794 42129076 PCT