Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1327 ATGGCAGGAGCACTGACAGATGATCAGATTGCTGAATTCCATGAAGCCTTTTGCCTCATTGACAAGGACTCTGATGGATTCATTACTGTGGATGAATTGGCAACCATTATCCGATCATTAGAAGGGAATCCAACGAAAGAAGAAATCCAAGACATGATTAGTGAGGTCGATATTGATGGGAATGGGAGTATAGATTTTGAAGAGTTCTTGAATATTATGGGAAGAAAAATGAAGGAAACTCTAGCTGAAGAGCTGAGAGAAGCATTCAAAGTATTTGACAGAGATCAAAATGGATACATATCCGCCACTGAGCTGAGGCACGTAATGATGAATTTGGGAGAGAGGCTGACAGATGAAGAGGCAGAACAAATGATTAGAGAGGCAGATTTGGATGGGGATGGTCAAGTTAGCTTTGAAGAATTTTCAAGGATTATGATGCTCAAATGA 447 0.4027 MAGALTDDQIAEFHEAFCLIDKDSDGFITVDELATIIRSLEGNPTKEEIQDMISEVDIDGNGSIDFEEFLNIMGRKMKETLAEELREAFKVFDRDQNGYISATELRHVMMNLGERLTDEEAEQMIREADLDGDGQVSFEEFSRIMMLK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1327 148 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Gso3g1327 148 Gene3D - 77 122 - -
Gso3g1327 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Gso3g1327 148 SUPERFAMILY EF-hand 4 146 IPR011992 -
Gso3g1327 148 CDD EFh 84 146 IPR002048 GO:0005509
Gso3g1327 148 Gene3D - 123 148 - -
Gso3g1327 148 Gene3D - 1 76 - -
Gso3g1327 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Gso3g1327 148 SMART efh_1 48 76 IPR002048 GO:0005509
Gso3g1327 148 SMART efh_1 120 148 IPR002048 GO:0005509
Gso3g1327 148 SMART efh_1 84 112 IPR002048 GO:0005509
Gso3g1327 148 SMART efh_1 12 40 IPR002048 GO:0005509
Gso3g1327 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Gso3g1327 148 Pfam EF-hand domain pair 12 73 IPR002048 GO:0005509
Gso3g1327 148 Pfam EF-hand domain pair 83 145 IPR002048 GO:0005509
Gso3g1327 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Gso3g1327 148 CDD EFh 12 73 IPR002048 GO:0005509
Gso3g1327 148 PRINTS Recoverin family signature 52 73 - -
Gso3g1327 148 PRINTS Recoverin family signature 76 95 - -
Gso3g1327 148 PRINTS Recoverin family signature 98 116 - -
Gso3g1327 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Gso3g1327 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Gso3g1327 148 PANTHER CALMODULIN-LIKE PROTEIN 9 1 146 - -
Gso3g1327 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Gso3g1327 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1327 Gso-Chr3 39187691 39188587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1327 1 148 EF-hand Containing Proteins AT3G56800 68.456 6.06e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1327 K02183 K13448 gmx:100527005 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1329 19 42018822 42019771 Gso3g1327 3 39187691 39188587 GST
Gso3g1327 3 39187691 39188587 Gso2g1192 2 14841305 14842627 PCT
Gso2g1192 2 14841305 14842627 Gso3g1327 3 39187691 39188587 PCT