Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1329 ATGGCAGGAGGACTGACAGATGATCAGATTGCTGAATTCCATGAAGCCTTTAGCCTCATTGACAAGGATTCTGATGGATTCATTACTGTGGATGAATTGACAACCATTATCCGATCATTAGAAGGGAATCCAACGAAAGAAGAAATCCAAAACATGATTAGTGAGGTCGATATTGATGGGAATGGGAGTATAGATTTTGAAGAGTTCTTGAATATTATGGGAAGAAAAATGAAGGAAACTTTAGCTGAAGAGCTGAAAGAAGCATTCAAAGTATTTGATAGAGATCAAAATGGATACATATCCGCCACTGAGCTGAGGCACGTAATGACGAATTTGGGAGAGAGGCTGACAGGTGAAGAGGCAGAACAAATGATTATGGAGGCAGATTTGGATGGGGATGGTCAAGTTAGTTTTGAAGAATTTGCAAGGATTATGATGCTCAAATGA 447 0.3937 MAGGLTDDQIAEFHEAFSLIDKDSDGFITVDELTTIIRSLEGNPTKEEIQNMISEVDIDGNGSIDFEEFLNIMGRKMKETLAEELKEAFKVFDRDQNGYISATELRHVMTNLGERLTGEEAEQMIMEADLDGDGQVSFEEFARIMMLK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1329 148 Gene3D - 80 148 - -
Gso19g1329 148 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Gso19g1329 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Gso19g1329 148 PANTHER CALMODULIN-LIKE PROTEIN 9 1 146 - -
Gso19g1329 148 CDD EFh 84 146 IPR002048 GO:0005509
Gso19g1329 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Gso19g1329 148 Gene3D - 1 79 - -
Gso19g1329 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Gso19g1329 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Gso19g1329 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Gso19g1329 148 PRINTS Recoverin family signature 52 73 - -
Gso19g1329 148 PRINTS Recoverin family signature 76 95 - -
Gso19g1329 148 PRINTS Recoverin family signature 98 116 - -
Gso19g1329 148 CDD EFh 12 73 IPR002048 GO:0005509
Gso19g1329 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Gso19g1329 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Gso19g1329 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Gso19g1329 148 SMART efh_1 84 112 IPR002048 GO:0005509
Gso19g1329 148 SMART efh_1 12 40 IPR002048 GO:0005509
Gso19g1329 148 SMART efh_1 120 148 IPR002048 GO:0005509
Gso19g1329 148 SMART efh_1 48 76 IPR002048 GO:0005509
Gso19g1329 148 SUPERFAMILY EF-hand 3 146 IPR011992 -
Gso19g1329 148 Pfam EF-hand domain pair 83 145 IPR002048 GO:0005509
Gso19g1329 148 Pfam EF-hand domain pair 12 73 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1329 Gso-Chr19 42018822 42019771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1329 1 82 EF-hand Containing Proteins AT2G27030 41.176 3.53e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1329 K02183 K13448 gmx:100795656 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1329 19 42018822 42019771 Gso3g1327 3 39187691 39188587 GST
Gso19g1329 19 42018822 42019771 Gso2g1192 2 14841305 14842627 PCT
Gso2g1192 2 14841305 14842627 Gso19g1329 19 42018822 42019771 PCT