Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1192 ATGGCAAATGCATGGACAGAAGATCAAATAGCTATATTCCATGAAGCGTTTGACGTTGTTGACAAGGACTCCGACGGTTTCATTTCGGTGGACGAACTCTTATCCATTGTGCGATCATTAGAAGGAAACTCAACAAAAGAAGAAATTCGAGAAATGATTAGTGAAGTTGACATTGATGGAAATGGCCGGAGTGTAAATTTTGAAAACTTCTTGAAAATTATGGGAAGGACAATGAAGGAAAATCAGACTGAGGAGCTAAAAGACTCGTTCAAAGTATTCGACAGGGATAATGATGGATATATATCAGCAACTGAGCTGAGACAAGTAATGGTGAAATTGGGAGAGAGGCTAACAGACGAAGAAGTTGAACAAATGATTAGAGAAGCTGATTTGGATGGAGATGGTCGAGTTAGCTATGAAGAATTTGTGAGGTTTATGACGTTAAATTGA 450 0.3844 MANAWTEDQIAIFHEAFDVVDKDSDGFISVDELLSIVRSLEGNSTKEEIREMISEVDIDGNGRSVNFENFLKIMGRTMKENQTEELKDSFKVFDRDNDGYISATELRQVMVKLGERLTDEEVEQMIREADLDGDGRVSYEEFVRFMTLN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1192 149 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 148 - -
Gso2g1192 149 ProSitePatterns EF-hand calcium-binding domain. 130 142 IPR018247 -
Gso2g1192 149 PANTHER CALCIUM BINDING PROTEIN 1 148 - -
Gso2g1192 149 CDD EFh 13 74 IPR002048 GO:0005509
Gso2g1192 149 ProSiteProfiles EF-hand calcium-binding domain profile. 117 149 IPR002048 GO:0005509
Gso2g1192 149 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Gso2g1192 149 SMART efh_1 48 77 IPR002048 GO:0005509
Gso2g1192 149 SMART efh_1 121 149 IPR002048 GO:0005509
Gso2g1192 149 SMART efh_1 12 40 IPR002048 GO:0005509
Gso2g1192 149 SMART efh_1 85 113 IPR002048 GO:0005509
Gso2g1192 149 Pfam EF-hand domain pair 14 74 IPR002048 GO:0005509
Gso2g1192 149 Pfam EF-hand domain pair 84 147 IPR002048 GO:0005509
Gso2g1192 149 ProSiteProfiles EF-hand calcium-binding domain profile. 44 80 IPR002048 GO:0005509
Gso2g1192 149 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Gso2g1192 149 Gene3D - 70 149 - -
Gso2g1192 149 Gene3D - 5 69 - -
Gso2g1192 149 SUPERFAMILY EF-hand 4 147 IPR011992 -
Gso2g1192 149 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Gso2g1192 149 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Gso2g1192 149 CDD EFh 85 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1192 Gso-Chr2 14841305 14842627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1192 1 146 EF-hand Containing Proteins AT3G56800 55.782 1.12e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1192 K02183 K13448 gmx:100778454 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1329 19 42018822 42019771 Gso2g1192 2 14841305 14842627 PCT
Gso3g1327 3 39187691 39188587 Gso2g1192 2 14841305 14842627 PCT
Gso2g1192 2 14841305 14842627 Gso19g1329 19 42018822 42019771 PCT
Gso2g1192 2 14841305 14842627 Gso3g1327 3 39187691 39188587 PCT