Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1274 ATGGGTAAGATTCTCCAAGAAACCGCGAAGCCGTCGGCGAATTCCACATCGGCGTACCCCTCTGCGGCGCCCGGCACCACGTCGTCGATGTCGGTGACGGAGACGGTGAGGGGGTCGCACCAGTTCAAGATTACGGGGTACTCGCTCTCGAAGGGGATCGGGATTGGGAAGTACATGGCCTCCGACGTGTTTTCCGTCGGAGGGTACAATTGGGCGATTTATTTCTACCCTGATGGGAAGAGCGTGGAGGACAATGCGACCTACGTGTCGCTCTTCATCGCGCTGGCCAGCGAAGGCACCGACGTTAGGGCACTTTTCGAGTTGACCCTTCTGGATCAGAGTGGGAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACTCTTGAGAGCGGGCCTTACACCTTGAAGTACCGTGGTAGTATGTGGGGTTACAAGCGGTTTTTCAAGAGAACAGCTCTAGAGACATCAGACTACCTTAAAGATGATTGTCTGTCTGTGAATTGTAGTGTTGGTGTTGTGAGGTCACGCACGGAAGGTCCGAAAATCTATACCATAGCAATACCGCCTTCTAGCATTGGTCAGAAATTTGGACATCTGCTGGAAAGTGGTAAAGGCAGTGATGTAAATTTTGAAGTTAATGATGATATTTTTGCTGCACATAAATTGGTACTAGCAGCTCGTTCACCTGTTTTCAGAGCACAGCTTTTTGGTCCTATGAAAGATCAGAATACCCAGTGTATTAAAGTTGAAGACATGGAAGCTCCAGTTTTCAAGGCATTGCTTCATTTTATATACTGGGACTCGCTACCAGACATGCAAGAGCTTACTGGGTTGGACTCAAAATGGGCATCAACCTTAATGGCTCAGCATCTTCTAGCAGCAGCTGATCGTCATGGCTTAGAGAGGCTTAGGCTGATGTGTGAAGCGAGTCTCTGTGAAGATGTTGCTATTAATACTGTGGCTACAACTCTAGCCTTGGCAGAGCAGCACCATTGTTTCCAGCTTAAAGCTGTCTGTCTCAAGTTTATTGCTACCTCTCAAAATCTTAGAGCTGTGATGCAAACTGACGGATTTGAGTACTTGAAGGAAAGCTGCCCATCTGTTCTGACTGAGCTATTGGAGTACGTTGCCAGATTTACTGAGCATTCAGACATCATGTGCAATCATAGGAATGATGCCCTACTTGATGGCAGTGATATAAATGGGAGGCGGGTGAAGCAAAGGCTCTAG 1233 0.4818 MGKILQETAKPSANSTSAYPSAAPGTTSSMSVTETVRGSHQFKITGYSLSKGIGIGKYMASDVFSVGGYNWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSRTEGPKIYTIAIPPSSIGQKFGHLLESGKGSDVNFEVNDDIFAAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGLDSKWASTLMAQHLLAAADRHGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSQNLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDIMCNHRNDALLDGSDINGRRVKQRL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1274 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 19 389 - -
Gso3g1274 410 Gene3D - 316 391 - -
Gso3g1274 410 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
Gso3g1274 410 CDD BTB_POZ_BPM_plant 193 313 - -
Gso3g1274 410 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
Gso3g1274 410 CDD MATH 38 171 IPR002083 GO:0005515
Gso3g1274 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 19 389 IPR045005 GO:0016567
Gso3g1274 410 Pfam BTB/POZ domain 198 314 IPR000210 GO:0005515
Gso3g1274 410 MobiDBLite consensus disorder prediction 7 26 - -
Gso3g1274 410 SUPERFAMILY TRAF domain-like 34 173 - -
Gso3g1274 410 SMART BTB_4 207 316 IPR000210 GO:0005515
Gso3g1274 410 MobiDBLite consensus disorder prediction 8 26 - -
Gso3g1274 410 CDD BACK_AtBPM-like 313 376 IPR034090 -
Gso3g1274 410 SUPERFAMILY POZ domain 184 314 IPR011333 -
Gso3g1274 410 Pfam MATH domain 57 171 IPR002083 GO:0005515
Gso3g1274 410 SMART math_3 42 154 IPR002083 GO:0005515
Gso3g1274 410 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Gso3g1274 410 Gene3D Potassium Channel Kv1.1; Chain A 183 310 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1274 Gso-Chr3 38446850 38451596 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1274 K10523 - gmx:100792660 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1274 19 41292017 41296842 Gso3g1274 3 38446850 38451596 GST
Gso3g1274 3 38446850 38451596 Gso2g1238 2 15388599 15392849 PCT
Gso3g1274 3 38446850 38451596 Gso10g0214 10 2223228 2227404 PCT
Gso2g1238 2 15388599 15392849 Gso3g1274 3 38446850 38451596 PCT
Gso10g0214 10 2223228 2227404 Gso3g1274 3 38446850 38451596 PCT