Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1269 ATGGCGGCTGTCCCAGCATCGCGGACCGATCCACCACCGGCAATGGTGGCGCCGCCGCCGTTGTTGGTCTCCGACTCCTTCGCCAAGGATGCCATTCTCGCCTGGTTCCGCGGCGAGTTCGCCGCCGCCAACGCCATCATCGACTCTCTCTGCGGCCACCTCGCGCACCTCGCCGCTGCATCCTCCGACTACGACGCCACCTTCACCGCCATCCACCGCCGCCGCCTCAACTGGATCCCCGTCATCCAGATGCAGAAGTATCACTCCATCGCCGACGTCACTCTCGAGCTCCGCAGAGTTGCCGAGAAGAAAACGGAGACCGAAGCCGCGAAGAAAAGCGAGAGCAGCTTCGACGAGGAAGGGAAATTGGAGAAGCAAGCGGTGGAGAATGGCGGAAACGACGGTGGTGACGACGATGCCGCGCCAGTGTATGATTCGCCGGACAGTGAAATTACTGATTCAGGATCTCAGGAAATGCAACCCAATGTGATGAACACCAATATATGTTCCAATCATGAAGAATGTGAAGGACGTTCTTCACAGATAAAGCTGACTAAGGGTTTCACAGCAAAGGAGTCCGTGAAGGGGCACATGGTGAATGTTGTAAAAGGATTAAAGTTGTATGAGGATGTTTTCTCTGAATCAGAAATCTGCAAGCTGACTGATTTTGTGAATGAGATTCATGCTGCTGGCCAGAACGGGGAGCTCTCAGGTGAAACTTTTATACTATTCAACAAACAGATGAAGGGAAACAAGAGAGAGCTGATTCAGTTGGGTGTTCCGATATTTGGACAGATAAAGGACGATACCAAAAACAACATAGAGCCGATTCCAGCACTTCTTCATGATGTCATTGATCACCTTATTCAATGGAAATTAATTCCAGAGTACAAAAGGCCAAATGGTTGTATAATCAACTTTTTTGAAGAGGAGGAATTTTCTCAGCCATTCCTGAAACCACCACATTTGGACCAACCTCTATCCACCCTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATCCTTACGAGTGAAAATGATGGGAACTACAAGGGGCCACTCATGCTCTCATTGAAGGAGGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGACATGGCAAGGTACGTAATGTGTCCATCCCCTAACAGAAGGGTGAGCATCACCTTCTTTAGAGTGAGACCAGACTCCAATCATTGCCAATCACCAACTCCTACCATGACAACTGCGATGACTCTTTGGCACCCAAGCATTTCTAGCCCTTTTACTTTGCCAAAGGGACCTCTAAATGGCTATGAGGCTATGGATATGATGCCCCAATGGGGATTACTTAGTGCTCCAATGGTCATGCTAACTCCTATGCGCCCTATGGCAGTAAATACTCGCAAACTTCCTCGAGGTGGTACTGGGGTTTTCTTGCCTTGGAAGGGAGCATCCAGAAAACATACAAGGCATCTTCCACCGCGCGCTCAAAAAGGACGCCTTATGGAATTACCCTCCCCAGTTGAATCACACATGGGAGAGTCCACTTCTGAACCCAGCATTGCTGTTGAAGGATAG 1563 0.4958 MAAVPASRTDPPPAMVAPPPLLVSDSFAKDAILAWFRGEFAAANAIIDSLCGHLAHLAAASSDYDATFTAIHRRRLNWIPVIQMQKYHSIADVTLELRRVAEKKTETEAAKKSESSFDEEGKLEKQAVENGGNDGGDDDAAPVYDSPDSEITDSGSQEMQPNVMNTNICSNHEECEGRSSQIKLTKGFTAKESVKGHMVNVVKGLKLYEDVFSESEICKLTDFVNEIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKDDTKNNIEPIPALLHDVIDHLIQWKLIPEYKRPNGCIINFFEEEEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILTSENDGNYKGPLMLSLKEGSLLVMRGNSADMARYVMCPSPNRRVSITFFRVRPDSNHCQSPTPTMTTAMTLWHPSISSPFTLPKGPLNGYEAMDMMPQWGLLSAPMVMLTPMRPMAVNTRKLPRGGTGVFLPWKGASRKHTRHLPPRAQKGRLMELPSPVESHMGESTSEPSIAVEG* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1269 520 SUPERFAMILY Clavaminate synthase-like 195 395 - -
Gso3g1269 520 MobiDBLite consensus disorder prediction 127 160 - -
Gso3g1269 520 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 1 518 - -
Gso3g1269 520 MobiDBLite consensus disorder prediction 473 520 - -
Gso3g1269 520 Gene3D - 188 403 IPR037151 -
Gso3g1269 520 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 1 518 IPR044842 GO:0003729|GO:0006402|GO:0032451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1269 Gso-Chr3 38365461 38372488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1269 K10767 - gmx:100796344 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1270 19 41235416 41241878 Gso3g1269 3 38365461 38372488 GST
Gso3g1269 3 38365461 38372488 Gso2g1241 2 15425522 15431458 PCT
Gso3g1269 3 38365461 38372488 Gso10g0210 10 2178864 2184404 PCT
Gso2g1241 2 15425522 15431458 Gso3g1269 3 38365461 38372488 PCT
Gso10g0210 10 2178864 2184404 Gso3g1269 3 38365461 38372488 PCT