Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1260 ATGGACGACGTCGTAGCTTTCTGCACTTTGCTTTTCGTTTGCTTCCTCCATTCCGTGAGAGGGATTTTAGACCCCAACGATTTCCTCGCTCTGCAATCCATTCGGAAATCCCTTCACGACGTTCCCGGTTCCAATTTCTTCTCCTCGTGGGACTTCACCGCCGACCCCTGCAACTTCGCCGGCGTTTTCTGCGCCGACGACAAAGTCATCGCACTCAACCTCGGCGATCCGAGAGCCGGTTCGCCCGGTCTGACCGGAAAACTAGACCCTTCCATTTCCAAACTCTCCGCTCTCGCCGACTTCACCGTCGTTCCAGGAAGAATCTACGGTCCTCTCCCTCAGTCTCTCTCTCAGTTGAAAAACCTCCGCTTCCTCGGCGTCAGCAGGAACTTCATCTCCGGCGAGATTCCTGCAGGTCTAGGTCAGCTCCGGAACCTCAGGACAATCGATCTCAGCTACAACCAACTCTCCGGAGCAATTCCTCCGTCCATCGGAAAAATGCCGCAGCTAACAAACCTATTCCTCTGCCACAACCGTCTCTCTGGTTCGGTTCCTTCATTCGCTTCGGCTTATTCCCTGACCCATCTTGAACTCAAACACAACATTCTCTCCGGTTCGCTCGCACAGGATTCTCTCCCTGCTTCCCTACAGTACCTCTCTTTATCATGGAACCGGTTCACTGGACCGGTCGACGGGCTCTTAACCCGGCTCAACCGGCTTAACTTCCTGGACCTTAGTTTAAACCAGTTCACAGGCCCAATCCCGGCCCAAATATTCACATTCCCTCTCACAAACCTCCAACTCGAAAGAAACCAGTTCTCCGGTCCAATCCAACCGTTTAACGAGGTGATGATCCAGACCGTTGATCTCAGCTACAACCGGTTATCCGGTGAGGTGTCGCCCATGCTAGCGAACGTGCAGAATCTGTACCTGAACAACAACGGGTTCACGGGGCAGGTACCGGGCAGCTTCGTGGAGCGGTTGTTAGCGGCGGGCATTCAGATACTGTATTTGCAGCACAATTTTCTGACCGGAATCGCGATAAGCCCGACGGCGGAGATTCCGGTGAGCAGCACCCTGTGTTTGCAGTATAACTGCATGGTGCCGCCGGTTCAGACGGCGTGCCCCTTCAACGCTGGCAGAAGAAAAATAAGGCCACCTCAGCAGTGTAACCGCTAA 1179 0.5403 MDDVVAFCTLLFVCFLHSVRGILDPNDFLALQSIRKSLHDVPGSNFFSSWDFTADPCNFAGVFCADDKVIALNLGDPRAGSPGLTGKLDPSISKLSALADFTVVPGRIYGPLPQSLSQLKNLRFLGVSRNFISGEIPAGLGQLRNLRTIDLSYNQLSGAIPPSIGKMPQLTNLFLCHNRLSGSVPSFASAYSLTHLELKHNILSGSLAQDSLPASLQYLSLSWNRFTGPVDGLLTRLNRLNFLDLSLNQFTGPIPAQIFTFPLTNLQLERNQFSGPIQPFNEVMIQTVDLSYNRLSGEVSPMLANVQNLYLNNNGFTGQVPGSFVERLLAAGIQILYLQHNFLTGIAISPTAEIPVSSTLCLQYNCMVPPVQTACPFNAGRRKIRPPQQCNR* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1260 392 SUPERFAMILY L domain-like 25 367 - -
Gso3g1260 392 PANTHER LRR RECEPTOR-LIKE KINASE 1 392 - -
Gso3g1260 392 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 1 392 - -
Gso3g1260 392 Gene3D Ribonuclease Inhibitor 26 189 IPR032675 -
Gso3g1260 392 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Gso3g1260 392 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Gso3g1260 392 Gene3D Ribonuclease Inhibitor 190 379 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1260 Gso-Chr3 38293550 38295299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1260 17 345 Receptor kinase-like Gene Family AT3G51740 32.787 1.05e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1260 - - gmx:100792651 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1260 19 41157845 41159610 Gso3g1260 3 38293550 38295299 GST
Gso3g1260 3 38293550 38295299 Gso2g1251 2 15545793 15547873 PCT
Gso3g1260 3 38293550 38295299 Gso10g0202 10 2099608 2101213 PCT
Gso2g1251 2 15545793 15547873 Gso3g1260 3 38293550 38295299 PCT
Gso10g0202 10 2099608 2101213 Gso3g1260 3 38293550 38295299 PCT