Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1175 ATGGCCCTCCTCAAACACCTCCTCCTCTCATTCACAATTATCATCATTTCTTTTGTTGCTTGTTATAGCACCTTGCAAGAGGACCCACCTAGTAGTATTATATATATTGATCATTCACCTTCTATTGATGATGGTAGGACATTCAAGAACTTGATCAAGCAAAGCACAAATGTTTTGAGCCTAAACAGGTTTGACAAGCGTAGTTCGCTTAAAAAGCTTAGTGTCAATGATTATGGAGCTAAGGGGAATGGTGATGCTGATGACACAGAGGCTTTCAAGAAGGCTTGGGATGTAGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTCAGGCTAATTATCTGCTCAAACCAATCAGATTCTCTGGCCCTTGCGAACCTAACGTTGAAGTCCAGATTTCTGGAACCCTTGAAGCATCAGATGATCCATCAGATTACGAGGATGACAGAAGACACTGGCTTGTATTTGACAATGTTAAGAAACTATTTGTTTATGGTGGTGGAACCATTGATGGAAACGGCAAGATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGCGCCCTTGCAAGGATGCCCCAACGGCTCTGACTTTCTATAATTGCGAGGACTTGACAGTTGAGAACTTGAGCATAGAAAATGCTCAACAAATCCATGTTTCATTCCAGGACTCCGTGAATATTAAGGTTTCTGGCCTTACCGTGACCGCACCAGAGGATAGCCCCAACACTGATGGGATTCATGTCACCAATACGCAAAACATCCAAATCTCAAGCTCTGTTATAGGAACTGGTGATGATTGCATATCTATTGTACATGGATCCAAAGATGTAGAAGCCACAGATATTACCTGTGGACCAGGTCATGGTATCAGTATTGGAAGCTTAGGGTCCGGAAAATCCAAGGAATTTGTTTCAGGAATACGAGTGAATAGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGCAGTGCTAGCGACATCCAGTTTCAGAACATTGGAATGGACAATGTGACCAACCCCATAATAATTAATCAGAATTATTGTGACAAAAAAAAGAAGCCATGCAAAAAAATGCTCTCGAGGAAATCCGCGATCCAAATCAAGAACGTGTTGTACCAGAACATAACGGGCACAAGTGCTTCTGATATAGCTGTGAAGTTTGATTGCAGCGATAAATTTCCATGCGAGGAGATAGTGTTGCAGAACATAGACCTCGAATGTGAAGGAGGAGATGATGCCGAGGCTATGTGTAACAATGTTGAATTGTCTTACTTAGGAAACGTTAGGCCTCGTTGCAACTCAAAAAAGAGAAAGGCATTTACTACTATTACCTCCATATGGAAATACTTCTCATGGTATATATGA 1398 0.4149 MALLKHLLLSFTIIIISFVACYSTLQEDPPSSIIYIDHSPSIDDGRTFKNLIKQSTNVLSLNRFDKRSSLKKLSVNDYGAKGNGDADDTEAFKKAWDVVCSSGEAILVVPQANYLLKPIRFSGPCEPNVEVQISGTLEASDDPSDYEDDRRHWLVFDNVKKLFVYGGGTIDGNGKIWWKNSCKRNKKRPCKDAPTALTFYNCEDLTVENLSIENAQQIHVSFQDSVNIKVSGLTVTAPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVHGSKDVEATDITCGPGHGISIGSLGSGKSKEFVSGIRVNRAKIFGTKNGVRIKTWQGGSGSSASDIQFQNIGMDNVTNPIIINQNYCDKKKKPCKKMLSRKSAIQIKNVLYQNITGTSASDIAVKFDCSDKFPCEEIVLQNIDLECEGGDDAEAMCNNVELSYLGNVRPRCNSKKRKAFTTITSIWKYFSWYI* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1175 465 PANTHER ENDO POLYGALACTURONASE 7 449 - -
Gso3g1175 465 SMART pbh1 225 251 IPR006626 -
Gso3g1175 465 SMART pbh1 335 356 IPR006626 -
Gso3g1175 465 SMART pbh1 252 273 IPR006626 -
Gso3g1175 465 SMART pbh1 305 326 IPR006626 -
Gso3g1175 465 SMART pbh1 202 222 IPR006626 -
Gso3g1175 465 Gene3D - 55 461 IPR012334 -
Gso3g1175 465 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Gso3g1175 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gso3g1175 465 PANTHER - 7 449 - -
Gso3g1175 465 SUPERFAMILY Pectin lyase-like 71 448 IPR011050 -
Gso3g1175 465 Pfam Glycosyl hydrolases family 28 106 432 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1175 Gso-Chr3 37276009 37279152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1175 1 445 Glycoside Hydrolase AT2G41850 52.423 1.44e-143 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1175 K01184 - gmx:100817828 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1174 19 40112279 40116380 Gso3g1175 3 37276009 37279152 GST
Gso2g1556 2 33333836 33338207 Gso3g1175 3 37276009 37279152 PCT