Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1174 ATGGCCCTCCTCAAACACCTCCTCCTCTCATTCACCATGATCATCATTTCTTTTGTTGCTTGTTATAGCACTTTGCAAGAGGACCCACCTAGTAGTATATATGTTGATCATTCACCTTCTATTGACGATGGTGGGACAGTCAAGAACTTGATCGAGCAAAGCACAAATGTTTTGAGCTTAAACAGGTTTGACAAGCGTAATTCGCTTAAAAAGGTTAGTGTCAATGATTATGGAGCTAAGGGGAATGGTGATACTGATGACACAGAGGCTTTCAAGAAGGCTTGGGATGTAGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTCAGGCGAATTATTTGCTCAAACCAATCAGATTCTCTGGCCCTTGCGAACCTAACGTTGAAGTCCAGATTTCTGGAACCCTTGATGCATCAGATGATCCATCAGATTACGAAGATGACAGCAAACACTGGCTTGTATTTGACAATATTAAGAAACTATTTGTTTATGGTGGTGGAACCATTGATGGAAACGGCAACATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGCGTCCCTGCAAGGATGCCCCAACGGCTCTGACTTTCTATAATTGCGAGGACTTAACAGTTGAGAATTTGAGAATAGAAAATGCTCAACAAATCCACGTTTCATTTCAGGACTCCGTGAATGTTCAGGTTTCTGGCCTTAACGTGACCGCACCAGAGGATAGCCCCAACACTGATGGGATTCATGTCACCAATACGCAAAATATTCAAATCTCAAGCTCTGTGATAGGAACTGGTGATGATTGTATATCTATTGTACATGGATCTAAAGATGTAGAAGCCACAGATATTACCTGTGGACCGGGCCATGGTATCAGTATTGGAAGCTTAGGGGCCGGAAAATCCAAGGAATTTGTTTCAGGAATACGAGTGAATAGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATTAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGCGACATCCAGTTTCAGAACATTGAAATGGACAATGTGACCAACCCCATAATAATAAATCAGAATTACTGCGACAAGAAAAAGAAGCCATGCAAAAAACTGCTCTCGAAGAAATCCGCGATCCAAATCAAGAATGTGTTGTACCAGAACATAACGGGCACAAGTGCTTCTGATATAGCTGTGAGGTTTGATTGCAGCGATAAATTTCCATGCCAGGAGATAGTGTTGCAGAACATAGACCTCCAATGTGAAGGAGGAGATGATGCCGATGCTATGTGTAACAATGTTGAATTGTCTTACTTAGGACACGTTAGGCCTCGTTGCAACTCAAAAAAGAGAAAGGCATTTACTACTATTACCTCCATATTGAAATACTTCTCATGGTACATATGA 1392 0.4152 MALLKHLLLSFTMIIISFVACYSTLQEDPPSSIYVDHSPSIDDGGTVKNLIEQSTNVLSLNRFDKRNSLKKVSVNDYGAKGNGDTDDTEAFKKAWDVVCSSGEAILVVPQANYLLKPIRFSGPCEPNVEVQISGTLDASDDPSDYEDDSKHWLVFDNIKKLFVYGGGTIDGNGNIWWKNSCKRNKKRPCKDAPTALTFYNCEDLTVENLRIENAQQIHVSFQDSVNVQVSGLNVTAPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVHGSKDVEATDITCGPGHGISIGSLGAGKSKEFVSGIRVNRAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMDNVTNPIIINQNYCDKKKKPCKKLLSKKSAIQIKNVLYQNITGTSASDIAVRFDCSDKFPCQEIVLQNIDLQCEGGDDADAMCNNVELSYLGHVRPRCNSKKRKAFTTITSILKYFSWYI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1174 463 Pfam Glycosyl hydrolases family 28 105 430 IPR000743 GO:0004650|GO:0005975
Gso19g1174 463 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Gso19g1174 463 SMART pbh1 251 272 IPR006626 -
Gso19g1174 463 SMART pbh1 224 250 IPR006626 -
Gso19g1174 463 SMART pbh1 304 325 IPR006626 -
Gso19g1174 463 SMART pbh1 333 354 IPR006626 -
Gso19g1174 463 SMART pbh1 201 221 IPR006626 -
Gso19g1174 463 SUPERFAMILY Pectin lyase-like 70 445 IPR011050 -
Gso19g1174 463 Gene3D - 54 460 IPR012334 -
Gso19g1174 463 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gso19g1174 463 PANTHER ENDO POLYGALACTURONASE 7 447 - -
Gso19g1174 463 PANTHER - 7 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1174 Gso-Chr19 40112279 40116380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1174 50 443 Glycoside Hydrolase AT2G41850 57.606 2.08e-147 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1174 K01184 - gmx:100797601 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1174 19 40112279 40116380 Gso3g1175 3 37276009 37279152 GST
Gso2g1556 2 33333836 33338207 Gso19g1174 19 40112279 40116380 PCT