Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1556 ATGGCCCTCCAAAGGCATCACCTCTCGTTACTTTTTATCATGTTTTCTTTTGTTGCTTGTCATAGCACCGTGCTATTGGATGATGGTAGTACTTTCAAGGACTTTATCAAACAAAAGAGTACAGATGTTTTGAGCTTAAAGAAATTTGTCAAGTTGGGTGACATTTCTTCTTCGCTTAAAACGGTTAACGTCAATGATTATGGAGCTCGTGGAGATGGCAAAACTGATGACACTCAGGCATTCAATGACGCTTGGGAAGTAGCATGTTCTTCTGGGGGTGCAGTTCTTCTGGTGCCTGAGAATAATTATCTACTCAAGCCATTCAGATTTTCTGGCCCTTGCAGATCCAACATCGAAGTCCAGATTTCTGGAACCATTGAAGCATCAGAAAACCTATCAGATTACAGCGAAGATCTCACTCACTGGCTTACTTTCGACAGTGTTGAGAAACTATCAGTTAAAGGTGGTGGTACCATCCATGGAAATGGGAACATATGGTGGCAAAACTCATGCAAAGTGAACGAAAAGCTTCCTTGCAAGGATGCCCCTACGGCATTGACTTTCTACAAGTGCAACGATTTGACAGTGGAGGATTTGACGATAAAAAATGGCCAAAAGATGCAAGTTTCATTCCAAGACTCTGAGAATGTTAAAGTTTCCGGTCTCACTGTGACAGCACCGGGGGATAGCCCAAACACTGATGGAATTCATGTCACAAACACCCAAAACATTCAAATCTCAAGCTCCGTTATAGGAACTGGTGATGATTGTATATCGATTGTAAGTGGATCCAAGGATGTACTAGCCACAGACATAATCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCCTAGGGGCTGGGGGATCCAAGGACTTCGTTTCAGGAATAACGGTGAAAGGAGCTATGCTTTCCGGAACTACAAATGGACTAAGAATTAAGACATGGCAGGGAGGGTCAGGAAGTGCAAGCAATATCCAATTTCAGAACATTCAAATGGACAATGTGACCAACCCCATCATAATAGATCAAAATTATTGTGATCAAGAGACACCATGCGAAGAACAAAAATCCGCTGTTCAGATTAGGAACGTGATGTACCAAAACATAAAGGGCACAAGTGCTTCTGATGTGGGTGTGCAATTTGATTGCAGCAACAACTTTCCATGCCAGGGGATAGTGTTGCAGAACATAGACTTGCAACTTGAAGGTGGAGGAGGGGCCAAGGCTTCATGCAACAGTGTTGAATTGTCCTACAGAGGAGATGTTATCCCTCTCTGCCCATAG 1287 0.4351 MALQRHHLSLLFIMFSFVACHSTVLLDDGSTFKDFIKQKSTDVLSLKKFVKLGDISSSLKTVNVNDYGARGDGKTDDTQAFNDAWEVACSSGGAVLLVPENNYLLKPFRFSGPCRSNIEVQISGTIEASENLSDYSEDLTHWLTFDSVEKLSVKGGGTIHGNGNIWWQNSCKVNEKLPCKDAPTALTFYKCNDLTVEDLTIKNGQKMQVSFQDSENVKVSGLTVTAPGDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVSGSKDVLATDIICGPGHGISIGSLGAGGSKDFVSGITVKGAMLSGTTNGLRIKTWQGGSGSASNIQFQNIQMDNVTNPIIIDQNYCDQETPCEEQKSAVQIRNVMYQNIKGTSASDVGVQFDCSNNFPCQGIVLQNIDLQLEGGGGAKASCNSVELSYRGDVIPLCP* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1556 428 PANTHER - 12 427 - -
Gso2g1556 428 Pfam Glycosyl hydrolases family 28 95 416 IPR000743 GO:0004650|GO:0005975
Gso2g1556 428 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
Gso2g1556 428 SUPERFAMILY Pectin lyase-like 59 427 IPR011050 -
Gso2g1556 428 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Gso2g1556 428 PANTHER ENDO POLYGALACTURONASE 12 427 - -
Gso2g1556 428 SMART pbh1 294 315 IPR006626 -
Gso2g1556 428 SMART pbh1 214 240 IPR006626 -
Gso2g1556 428 SMART pbh1 323 344 IPR006626 -
Gso2g1556 428 SMART pbh1 264 284 IPR006626 -
Gso2g1556 428 SMART pbh1 241 262 IPR006626 -
Gso2g1556 428 Gene3D - 54 422 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1556 Gso-Chr2 33333836 33338207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1556 10 427 Glycoside Hydrolase AT2G41850 54.756 3.98e-155 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1556 K01184 - gmx:100816917 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1556 2 33333836 33338207 Gso19g1174 19 40112279 40116380 PCT
Gso2g1556 2 33333836 33338207 Gso3g1175 3 37276009 37279152 PCT