Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1152 ATGTCTGAAACCTTCTGCAGCGACTGCAAGAGGCAGACGGAGGTGGTGTTCGACCACTCTGCGGGGGACACGGTGTGCTCCGAGTGCGGCCTCGTTTTGGAGTCTCACTCCATTGATGAAACCTCCGAGTGGCGAACCTTTGCCAATGAGTCTGGCGACAACGACCCTGTCCGTGTCGGTGGGCCCACCAACCCGCTACTGACTGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGTGGCTCCGGCGAGTTCCTGTCGTCCTCCGTCGGCCGCTGGCAGAACCGCGGCCTCATCGTCGCCTTCAAAACCATCGCCACCATGTCGGATAGGTTGGGACTCGTTGCAACCATCAAGGATCGGGCTAATGAGATATATAAACGGGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGTCTCTACATTGCTTGTCGACAAGAAGACAAACCACGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCCGAGCGAAAGAATACATAGTGAAACAACTGGGTTTGGAGCAGGGCCAATCTGTAGAGATAGGAACGATACATGCTGGGGACTTTATGAGACGTTTTTGTTCTAATCTCGGTATGACTAATCAAGCTGTTAAAGCGGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAAAAACCTCCCAAAGATATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCGTACAAGGATCTTTATCCCCATGTTTCAAAAATAATACCAAGCTGGTATGCAAAGGAAGAGGATTTGAAGAACCTATCCAGCCCTTAA 921 0.4908 MSETFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPNGGSGEFLSSSVGRWQNRGLIVAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLEQGQSVEIGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPPKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNLSSP* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1152 306 ProSitePatterns Transcription factor TFIIB repeat signature. 138 153 IPR023486 -
Gso3g1152 306 Pfam Transcription factor TFIIB repeat 97 179 IPR013150 GO:0017025
Gso3g1152 306 Pfam Transcription factor TFIIB repeat 201 284 IPR013150 GO:0017025
Gso3g1152 306 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 306 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 CDD CYCLIN 106 179 IPR013763 -
Gso3g1152 306 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 306 - -
Gso3g1152 306 SMART cyclin_7 104 186 IPR013763 -
Gso3g1152 306 SMART cyclin_7 205 284 IPR013763 -
Gso3g1152 306 CDD CYCLIN 201 283 IPR013763 -
Gso3g1152 306 Gene3D - 5 187 - -
Gso3g1152 306 SUPERFAMILY Cyclin-like 201 303 IPR036915 -
Gso3g1152 306 SUPERFAMILY Zinc beta-ribbon 3 50 - -
Gso3g1152 306 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Gso3g1152 306 Gene3D - 202 305 - -
Gso3g1152 306 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 PRINTS Transcription initiation factor IIB signature 146 165 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 PRINTS Transcription initiation factor IIB signature 173 188 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 PRINTS Transcription initiation factor IIB signature 206 224 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 PRINTS Transcription initiation factor IIB signature 238 254 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 PRINTS Transcription initiation factor IIB signature 270 284 IPR000812 GO:0006352|GO:0070897
Gso3g1152 306 Pfam TFIIB zinc-binding 5 47 IPR013137 -
Gso3g1152 306 SUPERFAMILY Cyclin-like 99 190 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1152 Gso-Chr3 36910535 36914238 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1152 K03124 - gmx:100800061 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1152 3 36910535 36914238 Gso3g1152 3 36910535 36914238 ECH
Gso19g1149 19 39725922 39729627 Gso3g1152 3 36910535 36914238 GST
Gso3g1152 3 36910535 36914238 Gso2g1584 2 35085564 35089841 PCT
Gso3g1152 3 36910535 36914238 Gso10g1004 10 25697772 25702204 PCT
Gso2g1584 2 35085564 35089841 Gso3g1152 3 36910535 36914238 PCT
Gso10g1004 10 25697772 25702204 Gso3g1152 3 36910535 36914238 PCT