Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1004 ATGTCAGACGCGTTCTGCAGCGACTGCAAGAGGCAGACGGAGGTGGTGTTCGACCACTCCGCCGGCGACACGGTGTGCTCGGAGTGCGGCCTCGTCCTCGAATCCCACTCCATCGACGAGACCTCCGAGTGGCGCACCTTCGCCAACGAGTCCGGCGACAACGACCCCAACCGTGTCGGTGGGCCCTCCAATCCCCTCCTCACCGACGGAGGCCTCTCGACCGTCATCGCCAAGCCCAACGGCGGCGGCGGTGGCGAGTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAACCGCGGCTCCAACCCCGATCGCGCCCTCATCCAAGCCTTCAAGACCATCGCCACCATGTCCGATAGGTTGGGACTAGTTGCGACCATCAAGGATCGGGCAAATGAGATATATAAGAGGGTTGAAGATCAAAAGTCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGTCTCTACATCGCTTGCCGACAAGAAGACAAACCTCGTACTGTAAAGGAAATTTGCTCTGTTGCCAATGGGGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATAGTAAAACAACTGGGTTTGGAGAATGGTAATGCTGTGGAGATGGGTACAATACATGCAGGGGACTTTATGAGGCGATTCTGTTCTAATCTTTGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTGCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAGAAGCCTCTCAAAGATATATCACTTGCCACAGGCGTTGCAGAAGGAACAATTAGGAACTCCTACAAGGATCTTTATCCTCATGTTTCCAAAATAATACCAAATTGGTATGCTAAGGAGGAGGATTTAAAGAACCTTTGCAGCCCTTGA 942 0.5053 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1004 313 CDD CYCLIN 113 186 IPR013763 -
Gso10g1004 313 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 313 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 CDD CYCLIN 208 290 IPR013763 -
Gso10g1004 313 Gene3D - 209 312 - -
Gso10g1004 313 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 PRINTS Transcription initiation factor IIB signature 153 172 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 PRINTS Transcription initiation factor IIB signature 180 195 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 PRINTS Transcription initiation factor IIB signature 213 231 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 PRINTS Transcription initiation factor IIB signature 245 261 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 PRINTS Transcription initiation factor IIB signature 277 291 IPR000812 GO:0006352|GO:0070897
Gso10g1004 313 SMART cyclin_7 111 193 IPR013763 -
Gso10g1004 313 SMART cyclin_7 212 291 IPR013763 -
Gso10g1004 313 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 313 - -
Gso10g1004 313 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Gso10g1004 313 SUPERFAMILY Cyclin-like 208 309 IPR036915 -
Gso10g1004 313 SUPERFAMILY Cyclin-like 106 197 IPR036915 -
Gso10g1004 313 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Gso10g1004 313 Gene3D - 5 194 - -
Gso10g1004 313 Pfam Transcription factor TFIIB repeat 103 186 IPR013150 GO:0017025
Gso10g1004 313 Pfam Transcription factor TFIIB repeat 205 291 IPR013150 GO:0017025
Gso10g1004 313 ProSitePatterns Transcription factor TFIIB repeat signature. 145 160 IPR023486 -
Gso10g1004 313 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1004 Gso-Chr10 25697772 25702204 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1004 K03124 - gmx:548070 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1584 2 35085564 35089841 Gso10g1004 10 25697772 25702204 GST
Gso19g1149 19 39725922 39729627 Gso10g1004 10 25697772 25702204 PCT
Gso3g1152 3 36910535 36914238 Gso10g1004 10 25697772 25702204 PCT
Gso10g1004 10 25697772 25702204 Gso19g1149 19 39725922 39729627 PCT
Gso10g1004 10 25697772 25702204 Gso3g1152 3 36910535 36914238 PCT