Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0473 ATGGGGGACTTCAACCTGGCGCTGGTGATCGTGGCGATCGTGGTGTGCGTCATCGTGTTCCTCTTCAACGTCTACCTCCTCGTCAACTTCCAGCACCCCGACGACGTCAACCAGGCCTACTTCCCTAAATTCGTCGTCGTCCTCGGCCTCTCTGTCGCCGCTATCTCCATTCTCATGCTCCCCGCCGACGTCGCCAACCGCCAGGCCTGCCGCCATGCCATCTACAATGGCGCCTGCAGCCTCACGCTCCCCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAGAGTGTTGGGAAGCGGATTAAGAGCGCCTTGTTGTGGATGGTGACCACTGCCATTGTGTGCGCTCTTGTTTTGGGGATTTTATATGGACTTATTGGGAAGGTGGACTTTACTGTTAGGCATCTCTCTTCTTCCACAAGCCAATTTCCTAGCACATGGGACTTCAATAGTGGTCAACAATGTATTGGAAGCACACATCAGTGTTCTGCATTCACTGCCAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTGTTGCTCTTGCCACTATTGTTGGATCTGTGCTTTTTGCTATATTTGGTGGTGTTGGTATTGCTTGTCTTCCATTGGGACTTATATTTTCATTCATTCGACGTCCAAAGGCTGTTATCACTCGTTCACAGTATATCAAGGAAGCAACTGAACTGGGTAAAAAAGCAAAAGAACTGAAGAAAGCAGCTGAATCACTTCATCAGGAAGAAAGAAGTGGTTCGAAGGGTAGGAAATTTCGTAAAAATGTGAAATCAGTAGAAAAGGAGTTGTTTCAATTAGAAGAAGATGTCAAGCTTCTTGAGGAGATGTATCCACAAGGGGAAAAGGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTCGTTTTGGGAATATTAGGGCTTATTGTTTCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGACCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGGGTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGAGCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAGTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGCAGCACAGGAAATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAAGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTTGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAA 1527 0.4591 MGDFNLALVIVAIVVCVIVFLFNVYLLVNFQHPDDVNQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACSLTLPMKDLWLAIYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALLWMVTTAIVCALVLGILYGLIGKVDFTVRHLSSSTSQFPSTWDFNSGQQCIGSTHQCSAFTASPSSEKTWTMRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAKELKKAAESLHQEERSGSKGRKFRKNVKSVEKELFQLEEDVKLLEEMYPQGEKAETTWALTVLGYLAKFVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVALAGLTFVYYAAFGWRRKKPSGRFQLSS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0473 508 Pfam LMBR1-like membrane protein 9 277 IPR006876 -
Gso3g0473 508 Pfam LMBR1-like membrane protein 285 486 IPR006876 -
Gso3g0473 508 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 1 508 - -
Gso3g0473 508 Coils Coil 248 275 - -
Gso3g0473 508 Coils Coil 289 309 - -
Gso3g0473 508 PANTHER BNAC05G43630D PROTEIN 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0473 Gso-Chr3 8500920 8507990 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0473 K14617 - gmx:100800757 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0473 3 8500920 8507990 Gso3g0473 3 8500920 8507990 ECH
Gso18g1615 18 47741048 47747023 Gso3g0473 3 8500920 8507990 PCT
Gso7g1268 7 18027105 18038481 Gso3g0473 3 8500920 8507990 PCT
Gso3g0473 3 8500920 8507990 Gso18g1615 18 47741048 47747023 PCT
Gso3g0473 3 8500920 8507990 Gso7g1268 7 18027105 18038481 PCT