Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0087 ATGGAAAGCGAGAAAGCGTTTGAGTTTCTCGGATGCGTTCCTCTCCTGCAGAGGCTTCCGAGCTCGTCTCTGAGGAAGATAGCTCAACTTGTGGATGTCAAACATTGTGAGCCCGGAGAGTATGTTGTTCGCGAGGGTGAACCCGGAGATGGTGTGTACTTCATATTGGATGGAGAGGCTGAGGTTCTTGGATCTGTTAGTGCCAATGATGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATGGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAGCTGACATGCTTAGTGCTTCCTCATGAGCACTCAACACTGCTGCAGCCAAAGTCTATCTGGAGAGCAGAAAATTCTCTCGAGACATGCTCACCTGTGGAGAATATATTGCATTTGGAGCCGCTCGAGGTAGATATCTTCCAAGGAATTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGGCTCTGGCTGCAGCTTCAAAATCTGTTGGCTCTCTTAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCAGGGGATTTAAACATGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTTCAAGGAAAGTGGATGGAATTCAAAAGGGAAATGTCATATTCACTCTGATGGCTTCATTTCAAAAAGAAGAATCAGGGATGGTCCACCAAGAAGTAGCTATACCATCTGTCCCTGCTCCAGATAAGCTTCTGCCAATGGAAGAGCTACGGGAGAGACGTCTTACTGACCCTCGTTTACCAATAACCTATCGGAACAAAGTAGCTACATCTCAATTCATCCCATGGCCCATAGAGATACGGTTATGTGAATATGAAACTGCAACAAATATGACAAAATCTCCTCCCAGTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATGAAGCCTTGCATAGGTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCACTCTATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCGATCTTTACTCCAAGTGCCTATAGTGCACGTGTCTTTGTCACCGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGACTAGCCAGGAAAATTAATCCCGGAAATTCAGCCATTAAATCTAAGTTATGA 1290 0.4442 MESEKAFEFLGCVPLLQRLPSSSLRKIAQLVDVKHCEPGEYVVREGEPGDGVYFILDGEAEVLGSVSANDENRPEFQLKQYDYFGYGLSNTVHQADVVALSKLTCLVLPHEHSTLLQPKSIWRAENSLETCSPVENILHLEPLEVDIFQGITLPDAPRFGKVFGGQMIGQALAAASKSVGSLKVVHSLHAYFILAGDLNMPITYQVHRLRDGKSFASRKVDGIQKGNVIFTLMASFQKEESGMVHQEVAIPSVPAPDKLLPMEELRERRLTDPRLPITYRNKVATSQFIPWPIEIRLCEYETATNMTKSPPSLRYWFRAKGKLSDDEALHRCVVAYASDLIFLQVSLNPHREKGFRTRSVSLDHSMWFHRSVKADDWVLFAIFTPSAYSARVFVTGQMFNQKGELLVSLVQEGLARKINPGNSAIKSKL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0087 429 PANTHER ACYL-COA THIOESTERASE 51 429 IPR003703 GO:0006637|GO:0047617
Gso3g0087 429 SMART cnmp_10 15 132 IPR000595 -
Gso3g0087 429 ProSiteProfiles cAMP/cGMP binding motif profile. 15 85 IPR000595 -
Gso3g0087 429 Gene3D Jelly Rolls 2 126 IPR014710 -
Gso3g0087 429 Pfam Thioesterase-like superfamily 161 414 - -
Gso3g0087 429 Gene3D - 129 418 IPR042171 -
Gso3g0087 429 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 42 58 IPR018488 -
Gso3g0087 429 PANTHER ACYL-COA THIOESTERASE 51 429 - -
Gso3g0087 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 248 417 IPR029069 -
Gso3g0087 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 130 242 IPR029069 -
Gso3g0087 429 CDD Thioesterase_II_repeat1 313 414 - -
Gso3g0087 429 TIGRFAM tesB: acyl-CoA thioesterase II 138 416 IPR003703 GO:0006637|GO:0047617
Gso3g0087 429 CDD CAP_ED 15 112 IPR000595 -
Gso3g0087 429 Pfam Cyclic nucleotide-binding domain 34 111 IPR000595 -
Gso3g0087 429 SUPERFAMILY cAMP-binding domain-like 6 112 IPR018490 -
Gso3g0087 429 CDD Thioesterase_II_repeat2 146 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0087 Gso-Chr3 965013 974096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0087 1 429 Acyl Lipid Metabolism Gene Families AT1G01710 64.569 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0087 K01068 - gmx:100803260 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0621 7 6630505 6638144 Gso3g0087 3 965013 974096 GST
Gso18g1976 18 52333085 52340530 Gso3g0087 3 965013 974096 PCT
Gso9g2145 9 45732539 45739938 Gso3g0087 3 965013 974096 PCT
Gso3g0087 3 965013 974096 Gso18g1976 18 52333085 52340530 PCT
Gso3g0087 3 965013 974096 Gso9g2145 9 45732539 45739938 PCT