Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0076 ATGTCAGAAATTGACTTGGCAGTTATTAAACCTGAGATGATGAAGCTGTATGTCTGGCTTCAGACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAGTTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGACTATTGTCGGTTTCATCAAGTACCAGGCCGTTCAAACAAGGAACGTAAATCTTATGATGAGAAATTTGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCTTTGGTGGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGGAAAACACCGGAGGAGATACGTGATATATTTCATTTGCCTGATGATCTTACAGAGGAAGAAAAGTTGGAGCCCTTGAGAAATATAACGGCTGACCCAAGGATCAGACTTTTGAACCGTTTGTATGCCAAAAAGAGAAAAGAACTAAAAGAGCGTGAAAGGTTAAAGTTATATATTGTTTTGGGTTTGGCCGCACAATTTTTTTGCTTCTTCTACCAAAGCTGTCAAACACAAGTAAGCATCTCATCCGTTGCTTCTATTCCAAAGATGCACCACCAACCATTGACAAAACTGAATGTTGAAGTTGAGGAAGAGCATGTTGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACATCAAAGAATAAAAAGAAGAACCGGAGGAAAAAAGAGCAACAGAAGAGCTCTTCTTTGAAGGAGGAATCTGAACTGAACAAAAAGGAGGTAAATGGTCATGATATCAGACACCAAAGTTCTGAAGCTGAGAGAATTAGCGAGACCTTGTATTTACCCTATGCAGATGATGACACATTTTCTCCTAAGGTTGAGTTTGATGATGGTGATATAGATGATGAGATCGATCCTGCTTTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTATCTTCAGGGAAAGAACGGGAGACAATACTTTTTACTACAGATGGTTTTCTAAGGCGACATGCTTGA 1170 0.3915 MSEIDLAVIKPEMMKLYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKSCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERLKLYIVLGLAAQFFCFFYQSCQTQVSISSVASIPKMHHQPLTKLNVEVEEEHVDERSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQKSSSLKEESELNKKEVNGHDIRHQSSEAERISETLYLPYADDDTFSPKVEFDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGKERETILFTTDGFLRRHA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0076 389 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Gso3g0076 389 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Gso3g0076 389 SMART skp1_3 15 116 IPR001232 GO:0006511
Gso3g0076 389 PANTHER LIGASE, PUTATIVE-RELATED 1 313 - -
Gso3g0076 389 PANTHER SKP1 1 313 IPR016897 GO:0006511
Gso3g0076 389 SUPERFAMILY Skp1 dimerisation domain-like 90 158 IPR036296 GO:0006511
Gso3g0076 389 Coils Coil 265 285 - -
Gso3g0076 389 MobiDBLite consensus disorder prediction 277 302 - -
Gso3g0076 389 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Gso3g0076 389 SUPERFAMILY POZ domain 17 80 IPR011333 -
Gso3g0076 389 MobiDBLite consensus disorder prediction 248 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0076 Gso-Chr3 820298 827492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0076 - - gmx:100785953 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0608 7 6465453 6471029 Gso3g0076 3 820298 827492 GST
Gso18g1966 18 52168125 52175979 Gso3g0076 3 820298 827492 PCT
Gso9g2134 9 45622174 45631871 Gso3g0076 3 820298 827492 PCT
Gso3g0076 3 820298 827492 Gso18g1966 18 52168125 52175979 PCT
Gso3g0076 3 820298 827492 Gso9g2134 9 45622174 45631871 PCT