Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1966 ATGTCAGAAATTGACATGGCGGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATCCAACAAGTGGAACAAGAAATTGCAATGTATTGCCCTCTGATTTGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAGTTGTGCGATATGTCTTCCTCAACGAGTCAGTCCTGTGACGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGAAAGTCTTATGATGAGAAATTCATTAGGATGGACACAAAGCGGCTATGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCTCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGTGAGATATTTCATCTGCCTGATGATCTTACTGAGGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAAAAGAGGAAAGAACTAAGAGAGCGTGAGAGGTTAAAGAATGTTGAAGTTGAAGAAGAGCATGTAGATGAGCGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCAAAGGAAGTTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGGAAAAAAGAGCAACAACAGAAGAACTCTTCTCTGAAGGAAGCTTCTGAAGTGAACAAGGTTGAAGTAAATGGTCAAAGTATCAGACACCAAAGTGCTGAAGCTGATAGAATTGCTGAGACCTCAAATTCACATACAGAAGATGTATTTGCTCATAGAGAATTTGATGATGGAGATATAGATGATGGGATTGATCCTGCGCTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCCGATTGAATTCTGACTGGCCAGAGAGGATGCAAGAACTTTTATCTTCAGGACAAGAAAGGAAGATGATGCTTTTTACTCCCAACGGAAATAGTTTTCTGAGGCGAAATGCTTGA 1044 0.3956 MSEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICQEIIQKGMGSSKSCAICLPQRVSPVTLSLILDYCRFHQVPGRSNKERKSYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELRERERLKNVEVEEEHVDERSVDDLLSFINGNDGDPKEVKTSKNKKKNRRKKEQQQKNSSLKEASEVNKVEVNGQSIRHQSAEADRIAETSNSHTEDVFAHREFDDGDIDDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKMMLFTPNGNSFLRRNA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1966 347 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Gso18g1966 347 PANTHER SKP1 1 280 IPR016897 GO:0006511
Gso18g1966 347 Coils Coil 224 244 - -
Gso18g1966 347 PANTHER SKP1-LIKE PROTEIN 20 1 280 - -
Gso18g1966 347 Coils Coil 170 190 - -
Gso18g1966 347 SMART skp1_3 15 116 IPR001232 GO:0006511
Gso18g1966 347 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Gso18g1966 347 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Gso18g1966 347 SUPERFAMILY POZ domain 16 80 IPR011333 -
Gso18g1966 347 MobiDBLite consensus disorder prediction 206 250 - -
Gso18g1966 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1966 Gso-Chr18 52168125 52175979 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1966 - - gmx:100782740 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1966 18 52168125 52175979 Gso9g2134 9 45622174 45631871 GST
Gso18g1966 18 52168125 52175979 Gso7g0608 7 6465453 6471029 PCT
Gso18g1966 18 52168125 52175979 Gso3g0076 3 820298 827492 PCT
Gso7g0608 7 6465453 6471029 Gso18g1966 18 52168125 52175979 PCT
Gso3g0076 3 820298 827492 Gso18g1966 18 52168125 52175979 PCT