Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0022 ATGGACACAACACACACAAACAGTGAATATGAAGATTGGAAGAGCATTGATATAGCAGATTCTATCTTAAGTTATGGAAGTGAATTGGGAGACATGGAAGAAAATGAATGGCAGATGGTGCAAACGAAAGGAAACCAATTTGTGGTGAACGACCAACCTTTCTATGTTAATGGATTCAACACATACTGGTTGATGGTATTTGCTGCGGATGAGTCCACAAGAGGGAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGTATGTCAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGACGTATTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAATCAGGCTCATATTATCACTGGTTAACAACTGGGAGGCTTATGGTGGCAAACCACAGTATGTGAAGTGGGGCAATGCAGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTTTCACATCCAACTCTCAGAAGCTACTACAAGGCTCATGTTAAGACGGTGCTCAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACCTCAGACTCCTCAGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATCCAAAACACCTAGTGGAGATTGGACTAGAAGGATTTTATGGCCCCTCAACACCTCAGAAATATCAGTTCAACCCAAATTCATATGCTCATGAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAGTTGCAGATTCCCATCTCCCATTCATAAAGACTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCCGTTGTTTTTGCTGAGTTTGGTGTATCTGCAAAAGCTCCTGGCTACAATTCAACATATAGAGACAACCTTATAAACACTGTGTACAAGACCATCCTGAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGACGGAACGGATTACATGGATGATGGCTATGCAATTGTTCTCTCAAAGTCACCTTCCACGTCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCCCTGTGTTCTAAGAAATGCCGTTGGGGTTGTAAGAAAAGAAATGTGTTGGAAAAAGTACTCTATCATGACGAACTGTAA 1317 0.4229 MDTTHTNSEYEDWKSIDIADSILSYGSELGDMEENEWQMVQTKGNQFVVNDQPFYVNGFNTYWLMVFAADESTRGKVTEVFKHASSVGMSVCRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEARKYKIRLILSLVNNWEAYGGKPQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDSSGDVLQDWIKEMAFYVKSIDPKHLVEIGLEGFYGPSTPQKYQFNPNSYAHEVGTDFIRNHQVLGVDFASVHIYPDSWISQSVADSHLPFIKTWMEAHIEDAEKYLGMPVVFAEFGVSAKAPGYNSTYRDNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSIISLQSTRLALFNSLCSKKCRWGCKKRNVLEKVLYHDEL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0022 438 Pfam Cellulase (glycosyl hydrolase family 5) 51 353 IPR001547 GO:0004553|GO:0071704
Gso3g0022 438 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 17 438 - -
Gso3g0022 438 SUPERFAMILY (Trans)glycosidases 40 397 IPR017853 -
Gso3g0022 438 PANTHER - 17 438 IPR045053 GO:0004553
Gso3g0022 438 Gene3D Glycosidases 37 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0022 Gso-Chr3 214306 218270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0022 34 438 Glycoside Hydrolase AT5G01930 74.693 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0022 K19355 - gmx:100801139 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1749 18 49868776 49871546 Gso3g0022 3 214306 218270 PCT
Gso9g2258 9 46849641 46852382 Gso3g0022 3 214306 218270 PCT
Gso3g0022 3 214306 218270 Gso18g1749 18 49868776 49871546 PCT
Gso3g0022 3 214306 218270 Gso9g2258 9 46849641 46852382 PCT