Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1749 ATGGAGAGATTTGGAGTACGCATTATTTCTTTGATTCTTCTTTTGATGCTTACTAAAAATTTAAGTTCCAATGCACTTGGTGACAGTATGAAGGATGAGGAAGGACTCAAAGAAGACCAAAATGAAATGGAAAATTCTCTCTCAAATTATGATGAAATGAGGGGCATGAAAGATGATGATTGGCAGATGGTGCAAAAGAAGGGAAACCATTTTGTGGTGAATGACAAGCCTTTCTATGTCAATGGATTCAACACATATTGGCTTATGGTATTTGCTGCAGATGAGTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAACAAGCATCCTCAGTTGGTATGACAGTTTGTAGGACTTGGGCATTCAATGATGGGCAGTGGAGGGCCCTACAGAAATCCCCATCAGTTTATGATGAAGAAGTTTTCAAGGCTTTGGACTTTGTGGTAAGTGAAGCAAAGAAATACAAAATCAGGCTTATCTTATCATTGGCCAACAACTGGGAGGCATATGGAGGCAAAGCACAATATGTGAAATGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAGCTACTACAAGGCCCATGTTAAGACTGTGCTCAATAGAGTTAACACATTCACAAACATCACTTATAAGGAAGATCCAACAATTTTCGCTTGGGAGTTGATGAATGAGCCTCGTTGCACCTCAGATCCCACGGGTGACAAGTTACAGGATTGGATACAAGAAATGGCATTCCATGTGAAGAAAATTGATCCAAAGCACCTAGTGGAGGTTGGAGTAGAAGGATTTTATGGCCCATCAACACCTCAGAGAACTCAGTTCAATCCCAACACATATGCTACACAGGTTGGAACTGATTTTATCAGGAACCACCTGGTTCTTGGAGTGGACTTCGCTTCTGTTCACATATATGCTGACTCTTGGATTTCACAACAAATTGCTGATACACATATCCCATTTATCAAATCATGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCAGTTGTTTTTGCTGAGTTTGGTGTATCTTCCAAAGACCCTGGCTACAATTCATCATATAGAGACACAGTTATAAGCACTGTGTACAGTACCATCCTAAACTCCACAAAGAAAGGAGGGAGTGGGGCTGGAAGCCTTTTGTGGCAATTTTTTCCTGATGGAACCGATAACATGGATGATGGGTATGCAATTGTTCTCTCAAAATCCCCTTCCACCTCAGGCATTATACAACTTCAATCCACTAGGCTTGCACTGTTTAATTCCTTGTGCAACACTAAATGCAATTGGGGTTGTAAGAAGAAGAAATTGTTGGAGGAAATACTCTATCGAGACGAACTGTGA 1389 0.414 MERFGVRIISLILLLMLTKNLSSNALGDSMKDEEGLKEDQNEMENSLSNYDEMRGMKDDDWQMVQKKGNHFVVNDKPFYVNGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEAKKYKIRLILSLANNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDPTGDKLQDWIQEMAFHVKKIDPKHLVEVGVEGFYGPSTPQRTQFNPNTYATQVGTDFIRNHLVLGVDFASVHIYADSWISQQIADTHIPFIKSWMEAHIEDAEKYLGMPVVFAEFGVSSKDPGYNSSYRDTVISTVYSTILNSTKKGGSGAGSLLWQFFPDGTDNMDDGYAIVLSKSPSTSGIIQLQSTRLALFNSLCNTKCNWGCKKKKLLEEILYRDEL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1749 462 Pfam Cellulase (glycosyl hydrolase family 5) 74 376 IPR001547 GO:0004553|GO:0071704
Gso18g1749 462 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 8 462 - -
Gso18g1749 462 Gene3D Glycosidases 61 435 - -
Gso18g1749 462 PANTHER - 8 462 IPR045053 GO:0004553
Gso18g1749 462 SUPERFAMILY (Trans)glycosidases 64 421 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1749 Gso-Chr18 49868776 49871546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1749 2 462 Glycoside Hydrolase AT5G01930 65.948 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1749 K19355 - gmx:100811794 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1749 18 49868776 49871546 Gso9g2258 9 46849641 46852382 GST
Gso18g1749 18 49868776 49871546 Gso3g0022 3 214306 218270 PCT
Gso3g0022 3 214306 218270 Gso18g1749 18 49868776 49871546 PCT