Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2074 ATGATATCTTCCTCGATGGCTCTGTCTTCCCCTGTTTCACTCTTTCAACTTTGCATGCTTCTCTTTTCATTCTTCTTCTCCACTTCCTTCTCCGCCAAACTTAACCCTACCATCGATTCACTCTCACTCTCTTTCCCACTCACCTCACTCCCTCTCTCCACAGCAAAACCTCTAAACAGAAACCCAAATCTCAGAACCCTTTCTTCTTCTTCTTCTTCCTACAACATAAAATCTTCGTTCAAATACTCCATGGCCCTGGTGGTTACTCTACCAATAGGAACCCCTCCACAGCATCAACAAATGGTGTTGGACACAGGAAGCCAACTCTCATGGATTCAGTGCCACAACAAAACCCCTCCAACGGCGTCGTTTGATCCATCACTCTCTTCATCCTTCTATATTCTTCCTTGCACCCACCCTCTCTGCAAACCCCGCGTTCCCGATTTTACCCTCCCGACAACCTGCGACCAGAACCGCCTCTGCCACTACTCATACTTCTACGCCGACGGCACCTACGCCGAGGGCAACCTCGTCAGAGAAAAACTCACCTTCTCCCCTTCCCAAACTACCCCTCCACTTATTCTAGGCTGCGCCACCGAGTCCAGCGACGCCAGGGGCATTCTTGGAATGAACCTCGGCCGCTTGTCCTTCCCCTCGCAAGCCAAAGTCACCAAATTCTCGTACTGTGTCCCCACCCGACAAGCCGCGAACGACAACAACCTCCCAACCGGGTCGTTCTACCTCGGAAACAACCCAAACTCCGCGCGCTTCCGCTACGTCAGCATGTTGACCTTCCCTCAAAGTCAACGCATGCCGAACCTGGACCCATTAGCCTACACCGTCCCCATGCAAGGAATAAGAATCGGTGGCAAAAAACTCAACATCCCACCTTCTGTTTTTCGACCCAACGCTGGCGGGTCGGGTCAAACCATGGTCGACTCCGGATCCGAATTCACCTTCCTTGTCGACGCGGCTTATGATGCGGTGCGGGAAGAGGTTATTAGAGTGGTGGGGCCTAGAGTTAAGAAGGGGTACGTGTACGGTGGTGTGGCTGACATGTGTTTCAACGGGAGTGCGATGGAGATCGGACGGCTGATAGGGGACGTGGCGTTCGAGTTCGAGAAAGGCGTGGAGATCGTGGTTCCGAAGGAGAGGGTGCTCGCTGACGTGGGCGGTGGGGTCCACTGCCTGGGAATCGGGAGGTCAGAAAGATTAGGTGCGGCCAGCAACATCATAGGCAACTTCCACCAGCAAAATCTATGGGTGGAGTTTGATCTCGCGAACCGCAGAATCGGATTCGGTGTGGCCGATTGTAGCAGATCATAG 1326 0.5317 MISSSMALSSPVSLFQLCMLLFSFFFSTSFSAKLNPTIDSLSLSFPLTSLPLSTAKPLNRNPNLRTLSSSSSSYNIKSSFKYSMALVVTLPIGTPPQHQQMVLDTGSQLSWIQCHNKTPPTASFDPSLSSSFYILPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVREKLTFSPSQTTPPLILGCATESSDARGILGMNLGRLSFPSQAKVTKFSYCVPTRQAANDNNLPTGSFYLGNNPNSARFRYVSMLTFPQSQRMPNLDPLAYTVPMQGIRIGGKKLNIPPSVFRPNAGGSGQTMVDSGSEFTFLVDAAYDAVREEVIRVVGPRVKKGYVYGGVADMCFNGSAMEIGRLIGDVAFEFEKGVEIVVPKERVLADVGGGVHCLGIGRSERLGAASNIIGNFHQQNLWVEFDLANRRIGFGVADCSRS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2074 441 Pfam Xylanase inhibitor N-terminal 87 241 IPR032861 -
Gso2g2074 441 Pfam Xylanase inhibitor C-terminal 278 433 IPR032799 -
Gso2g2074 441 PANTHER ASPARTYL PROTEASE-RELATED 18 441 IPR001461 GO:0004190|GO:0006508
Gso2g2074 441 SUPERFAMILY Acid proteases 87 439 IPR021109 -
Gso2g2074 441 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Gso2g2074 441 Gene3D Acid Proteases 248 441 IPR021109 -
Gso2g2074 441 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 18 441 - -
Gso2g2074 441 Gene3D Acid Proteases 64 247 IPR021109 -
Gso2g2074 441 CDD pepsin_A_like_plant 87 438 IPR034161 -
Gso2g2074 441 ProSiteProfiles Peptidase family A1 domain profile. 86 434 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2074 Gso-Chr2 45340525 45342380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2074 88 440 Miscellaneous Gene Families AT1G44130 23.038 7.35e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2074 - - gmx:100790706 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0367 18 3575616 3577390 Gso2g2074 2 45340525 45342380 PCT
Gso13g1248 13 27623075 27625035 Gso2g2074 2 45340525 45342380 PCT
Gso2g2074 2 45340525 45342380 Gso18g0367 18 3575616 3577390 PCT
Gso2g2074 2 45340525 45342380 Gso13g1248 13 27623075 27625035 PCT