Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1248 ATGCCTCCATCATCACTGTTTTCAAACATGCATTTCTTGTTCTTTTTTCTTCTCTCCTCCATACACCTCTCTGTACAACTCAACCACACCACCACCACCACCACCACTAACAACTCAACCTCATTATTCTCACTCTCTTTCCCTCTCACATCACTCTCCCTCTCCACCAACACCGCTCTCAAGATGATGCTACGCAACTCACTCATTGCAAACACAAACAACAACAACACACAACTTAAATCACCACCTTCTTCTCCTTACAACTACAAGTTGTCTTTCAAATACTCCATGGCTTTAATCGTGGACCTTCCCATTGGTACCCCACCGCAGGTCCAGCCCATGGTGTTGGACACCGGAAGCCAGCTCTCGTGGATTCAGTGTCACAAAAAAGCACCCGCGAAGCCTCCCCCAACGGCGTCGTTTGACCCTTCTCTCTCCTCTACCTTTTCTACCCTTCCGTGTACTCACCCTGTCTGCAAGCCCCGAATTCCCGATTTTACCCTCCCCACCTCCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACTTACGCCGAGGGCAATCTCGTCAGAGAAAAATTCACTTTTTCGCGTTCCCTTTTTACCCCCCCTCTCATCCTCGGCTGCGCCACCGAGTCCACCGACCCCAGGGGCATTTTGGGAATGAACCGCGGACGCCTCTCCTTCGCTTCCCAGTCCAAAATTACAAAATTCTCCTACTGTGTCCCCACCCGCGTGACCCGACCTGGGTACACTCCAACCGGGTCGTTCTACCTTGGCCACAACCCGAATTCCAACACGTTTCGGTACATCGAAATGTTGACTTTTGCTCGGAGTCAACGCATGCCGAATCTCGATCCTTTGGCCTACACTGTAGCCTTACAGGGGATAAGAATCGGAGGAAGAAAACTCAACATCTCGCCGGCGGTTTTTCGTGCCGATGCTGGTGGGTCGGGTCAAACCATGCTTGACTCCGGATCCGAGTTTACTTACCTTGTTAACGAGGCTTATGATAAAGTGCGGGCTGAAGTAGTTAGGGCTGTGGGCCCCAGGATGAAGAAGGGTTACGTGTACGGTGGTGTTGCGGACATGTGTTTCGATGGGAATGCGATTGAGATCGGACGGCTAATAGGGGACATGGTGTTTGAGTTCGAGAAGGGGGTGCAAATAGTGGTTCCCAAGGAGAGGGTTCTGGCTACCGTGGAGGGTGGGGTTCACTGCATCGGGATTGCGAACTCTGATAAATTGGGTGCGGCCAGTAACATTATTGGGAATTTCCATCAGCAGAATCTGTGGGTGGAGTTTGATCTGGTCAATCGCAGAATGGGTTTTGGTACGGCTGATTGTAGTAGATTGGCTAAGTAG 1380 0.5145 MPPSSLFSNMHFLFFFLLSSIHLSVQLNHTTTTTTTNNSTSLFSLSFPLTSLSLSTNTALKMMLRNSLIANTNNNNTQLKSPPSSPYNYKLSFKYSMALIVDLPIGTPPQVQPMVLDTGSQLSWIQCHKKAPAKPPPTASFDPSLSSTFSTLPCTHPVCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSLFTPPLILGCATESTDPRGILGMNRGRLSFASQSKITKFSYCVPTRVTRPGYTPTGSFYLGHNPNSNTFRYIEMLTFARSQRMPNLDPLAYTVALQGIRIGGRKLNISPAVFRADAGGSGQTMLDSGSEFTYLVNEAYDKVRAEVVRAVGPRMKKGYVYGGVADMCFDGNAIEIGRLIGDMVFEFEKGVQIVVPKERVLATVEGGVHCIGIANSDKLGAASNIIGNFHQQNLWVEFDLVNRRMGFGTADCSRLAK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1248 459 Gene3D Acid Proteases 72 261 IPR021109 -
Gso13g1248 459 PANTHER ASPARTYL PROTEASE-RELATED 10 459 IPR001461 GO:0004190|GO:0006508
Gso13g1248 459 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 459 - -
Gso13g1248 459 SUPERFAMILY Acid proteases 100 457 IPR021109 -
Gso13g1248 459 ProSiteProfiles Peptidase family A1 domain profile. 99 450 IPR033121 -
Gso13g1248 459 Gene3D Acid Proteases 263 458 IPR021109 -
Gso13g1248 459 Pfam Xylanase inhibitor C-terminal 294 450 IPR032799 -
Gso13g1248 459 Pfam Xylanase inhibitor N-terminal 101 253 IPR032861 -
Gso13g1248 459 CDD pepsin_A_like_plant 100 454 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1248 Gso-Chr13 27623075 27625035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1248 101 459 Miscellaneous Gene Families AT1G44130 23.929 5.75e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1248 - - gmx:100803089 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0367 18 3575616 3577390 Gso13g1248 13 27623075 27625035 GST
Gso13g1248 13 27623075 27625035 Gso2g2074 2 45340525 45342380 PCT
Gso2g2074 2 45340525 45342380 Gso13g1248 13 27623075 27625035 PCT