Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1229 ATGGATAATTCCAACCTTCAACGTCTCTTCACTCTCTTCCTTTTTTCCCTAATTGCACCCTCTTTGGCTCAACAATCCTTCAGACCCAGAGCCCTCGTTGTCCCAGTTAAAAAAGACGCTTCCACCCTCCAATATATTACTCAAATCAAACAAAGAACACCACTCGTCCCAGAAAACCTAGTACTTGACATCGGTGGCCAATTCCTGTGGGTCGATTGCGACAACAACTACGTCTCCTCCACTTACCGCCCCGCACGGTGTGGCTCCGCCCAGTGCTCCCTCGCCAGATCCGACAGCTGCGGAAACTGCTTCTCCGCCCCAAAACCCGGCTGCAACAACAACACGTGCGGCGTCACGCCAGACAACACCGTCACCGGCACCGCCACCAGCGGCGAGCTCGCGCAAGACGTCGTCTCCCTCCAATCCACCAACGGTTTCAACCCTATACAAAACGCCACCGTTTCGCGCTTCTTATTCTCCTGCGCCCCAACCTTCTTACTCCAAGGCCTCGCCACCGGTGTCAGCGGCATGGCCGGTCTCGGCAGAACTAGAATTGCTCTCCCCTCGCAGCTCGCTTCCGCTTTCAGCTTCCGTAGAAAATTCGCCGTCTGCCTCTCATCTTCAAACGGCGTCGCTTTCTTCGGTGACGGACCCTACGTTCTTCTCCCCAACGTCGACGCTTCTCAGCTACTCACCTTCACGCCGTTATTAATTAACCCCGTTAGCACCGCCTCTGCTTTCTCCCAGGGAGAGCCTTCCGCCGAGTATTTCATCGGCGTGAAATCGATTAAAATCGACGAAAAGACAGTGCCGTTAAACACCACTTTGTTGTCCATAAACAGCAAAGGCGTTGGTGGAACCAAGATTAGTTCCGTTAACCCTTACACTGTTTTGGAGGATTCTATCTTCAAAGCGGTGACGGAGGCTTTCGTGAAAGCTTCTTCTGCTAGGAACATAACGAGGGTGGCTTCTGTGGCGCCGTTTGAGGTGTGCTTCAGTAGGGAGAACGTGCTCGCCACGCGGTTGGGGGCGGCGGTGCCAACTATTGAGCTTGTGCTGCAGAACCAGAAGACGGTTTGGAGGATTTTTGGAGCGAACTCGATGGTTAGTGTGAGCGATGATAAGGTGCTATGCCTTGGGTTTGTGAATGGAGGTGAGAATCCGAGGACTTCGATAGTGATTGGAGGATATCAGCTGGAGGATAATCTTTTGCAGTTCGATTTGGCTACTTCAAGATTGGGATTCAGCTCTTTGCTCTATGGAAGCCGAACTACGTGTGCTAACTTCAACTTTACCTCCGCTGCGTAG 1308 0.526 MDNSNLQRLFTLFLFSLIAPSLAQQSFRPRALVVPVKKDASTLQYITQIKQRTPLVPENLVLDIGGQFLWVDCDNNYVSSTYRPARCGSAQCSLARSDSCGNCFSAPKPGCNNNTCGVTPDNTVTGTATSGELAQDVVSLQSTNGFNPIQNATVSRFLFSCAPTFLLQGLATGVSGMAGLGRTRIALPSQLASAFSFRRKFAVCLSSSNGVAFFGDGPYVLLPNVDASQLLTFTPLLINPVSTASAFSQGEPSAEYFIGVKSIKIDEKTVPLNTTLLSINSKGVGGTKISSVNPYTVLEDSIFKAVTEAFVKASSARNITRVASVAPFEVCFSRENVLATRLGAAVPTIELVLQNQKTVWRIFGANSMVSVSDDKVLCLGFVNGGENPRTSIVIGGYQLEDNLLQFDLATSRLGFSSLLYGSRTTCANFNFTSAA* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1229 435 PANTHER ASPARTYL PROTEASE-RELATED 9 434 IPR001461 GO:0004190|GO:0006508
Gso2g1229 435 SUPERFAMILY Acid proteases 36 425 IPR021109 -
Gso2g1229 435 Gene3D Acid Proteases 217 433 IPR021109 -
Gso2g1229 435 Pfam Xylanase inhibitor C-terminal 255 416 IPR032799 -
Gso2g1229 435 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 434 - -
Gso2g1229 435 Pfam Xylanase inhibitor N-terminal 45 216 IPR032861 -
Gso2g1229 435 Gene3D Acid Proteases 29 216 IPR021109 -
Gso2g1229 435 CDD xylanase_inhibitor_I_like 51 419 IPR033868 -
Gso2g1229 435 ProSiteProfiles Peptidase family A1 domain profile. 45 416 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1229 Gso-Chr2 15296077 15297742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1229 59 417 Miscellaneous Gene Families AT1G77480 23.097 4.79e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1229 - - gmx:100797018 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1229 2 15296077 15297742 Gso19g1994 19 48540772 48542285 ECH
Gso2g1229 2 15296077 15297742 Gso2g1229 2 15296077 15297742 ECH
Gso3g1282 3 38566436 38568040 Gso2g1229 2 15296077 15297742 PCT
Gso2g1229 2 15296077 15297742 Gso3g1282 3 38566436 38568040 PCT