Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0403 ATGTCTCCGTTCTTCTCACATCATCCACTTTCTCCTCAACGATTCTTCATTTTCCTACTCATCCTGGCTTTCAGAGGGGTGAGAGTCTCAGCCACAACATTCACATTCGTGAACAAGTGTGACCACACGGTGTGGCCAGGTATTCTCGGAAAACCGGACATCGGAACAACTGGTTTCGAGCTCAAGAGAGGAAGCACGCGTACCTTCGACGGCCCGCCTGGTTGGTCGGGCCGCTTCTGGGGCCGAACCGGCTGCCAATTCGACCAATCCGGCCAGGGCACGTGCGCCACCGGCGACTGCGGCTCCGGCCAGGTAACCTGCAACGGTGCCGGCGCCACTCCGCCGGCCACCCTCGCCGAGTTCACGCTCGGCGAGGGAGCCCCGGACTACTACGACGTGAGCCTCGTCGACGGCTACAACCTCCCCATGATGGTGGACGCAAGCGGCGGCTCCGGCGCCTGCGCCGCCACGGGGTGCGGTGCCGACCTGAACCGGCGGTGTCCGGCGGAGTTGAGGGTGGACGGCGGCGACGCTTGCCAGAGCGCGTGCCGCGCTTTCGGGAAGCCGGAGTTTTGCTGCAGCGGGGCGTTTAATTCACCGGCGGCGTGCGCGCCGTCGATGTACTCGCAGATTTTTAAGGCTGCGTGCCCCAAATCTTATAGCTATGCGTTTGATGATGCTACGAGCACTTTTACGTGTACTGCCGCGGATTACACTGTCACATTTTGTCCCTTTTCTTCTCCAAGTTTGAAGTCATTAATGGAATCAGGGCCAGGATCATCGGTTGAGCAGGCAGCAGTAGCTACTACATCATGGATAGCCAATTTGGCCACAGGGGACTCCACAAGAAGCAGAAGCCAACCATTTTCAGCTTCCAACTCTGCATTTTTTGTGGCTGTCACTTTAATTCTTTCCTATTTAGTCTCATAG 930 0.5774 MSPFFSHHPLSPQRFFIFLLILAFRGVRVSATTFTFVNKCDHTVWPGILGKPDIGTTGFELKRGSTRTFDGPPGWSGRFWGRTGCQFDQSGQGTCATGDCGSGQVTCNGAGATPPATLAEFTLGEGAPDYYDVSLVDGYNLPMMVDASGGSGACAATGCGADLNRRCPAELRVDGGDACQSACRAFGKPEFCCSGAFNSPAACAPSMYSQIFKAACPKSYSYAFDDATSTFTCTAADYTVTFCPFSSPSLKSLMESGPGSSVEQAAVATTSWIANLATGDSTRSRSQPFSASNSAFFVAVTLILSYLVS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0403 309 SMART tha2 34 244 IPR001938 -
Gso2g0403 309 Pfam Thaumatin family 38 244 IPR001938 -
Gso2g0403 309 Gene3D Thaumatin 32 244 IPR037176 -
Gso2g0403 309 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 8 268 - -
Gso2g0403 309 ProSitePatterns Thaumatin family signature. 91 107 IPR017949 -
Gso2g0403 309 ProSiteProfiles Thaumatin family profile. 31 244 IPR001938 -
Gso2g0403 309 SUPERFAMILY Osmotin, thaumatin-like protein 32 244 IPR037176 -
Gso2g0403 309 PANTHER OS03G0233200 PROTEIN 8 268 IPR001938 -
Gso2g0403 309 CDD TLP-PA 33 243 - -
Gso2g0403 309 PRINTS Pathogenesis-related protein signature 33 45 IPR001938 -
Gso2g0403 309 PRINTS Pathogenesis-related protein signature 57 66 IPR001938 -
Gso2g0403 309 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Gso2g0403 309 PRINTS Pathogenesis-related protein signature 91 120 IPR001938 -
Gso2g0403 309 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Gso2g0403 309 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0403 Gso-Chr2 4278873 4281366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0403 16 281 Receptor kinase-like Gene Family AT5G38280 43.728 1.00e-74 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0403 - - gmx:100778987 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0403 2 4278873 4281366 Gso16g1012 16 27841734 27844530 GST
Gso11g0655 11 5886991 5888977 Gso2g0403 2 4278873 4281366 PCT
Gso2g0403 2 4278873 4281366 Gso11g0655 11 5886991 5888977 PCT