Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1012 ATGTCTCCGTATCATGGACATTCTTCTCAACGATTCTTCATTTTCCTACTCATCCTCGCTTTCAGAGGGGTGAGAGTTACAGCCACAACATTCACATTCGTGAACAAGTGCGACCACACAGTGTGGCCAGGCGTTCTAGGAAAACCGGACATCGGAACAACCGGTTTCGAGCTCAAGAGAGGAAGCACGCGTAGCTTCGACGCGCCGCCGGGTTGGTCGGGGAGGTTCTGGGGCCGAACCGGCTGCGAATTCGACGACTCCGGCCACGCCACGTGCGCCACCGGCGACTGCGGGTCCGGCCAGGTTAACTGCAACGGCGCCGGAGCCACGCCGCCGGCCACCCTCGCCGAGTTCACGCTCGGCGAGGGTGCCCCGGACTACTACGACGTGAGTCTCGTCGACGGCTACAACCTCCCGATGATGGTGGACGCCAGCGGCGGCTCCGGCTCCTGCGCCGCCACTGGGTGCGGCGCCGACCTGAACCGGCGGTGCCCGGAGGAGCTGAGGGTGGACGGCGGCGACGCGTGCCAGAGCGCGTGCCGCGCGTTCGGGAAGCCGGAGTTTTGCTGCAGCGACGCGTTTAATTCACCGGCGGCGTGCGCGCCGTCGATGTACTCGCAGATTTTCAAGGCTGCGTGCCCAAAATCTTATAGCTATGCGTATGATGATGCTACGAGCACTTTTACGTGCACCGCTGCTGATTACACTGTCACATTTTGTCCCTCTTCTTCTCCAAGTTTGAAGTCATTAATGGAATCGGGGCCAGGATCATCGGTGGAGCAAGCAGCAGTAGCTACTACTTCATGGATAGCCAATTTGGCCACAGGGGACTCCACAAGAAGCAGAAGCCAACCATTTTCAGCTTCCAACTCTGCATTTTTTGTGGCTGTCACTTTCATTATTTCCTATTTAGTCTCATAG 921 0.5831 MSPYHGHSSQRFFIFLLILAFRGVRVTATTFTFVNKCDHTVWPGVLGKPDIGTTGFELKRGSTRSFDAPPGWSGRFWGRTGCEFDDSGHATCATGDCGSGQVNCNGAGATPPATLAEFTLGEGAPDYYDVSLVDGYNLPMMVDASGGSGSCAATGCGADLNRRCPEELRVDGGDACQSACRAFGKPEFCCSDAFNSPAACAPSMYSQIFKAACPKSYSYAYDDATSTFTCTAADYTVTFCPSSSPSLKSLMESGPGSSVEQAAVATTSWIANLATGDSTRSRSQPFSASNSAFFVAVTFIISYLVS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1012 306 SMART tha2 31 241 IPR001938 -
Gso16g1012 306 Pfam Thaumatin family 35 241 IPR001938 -
Gso16g1012 306 CDD TLP-PA 30 240 - -
Gso16g1012 306 Gene3D Thaumatin 29 241 IPR037176 -
Gso16g1012 306 ProSiteProfiles Thaumatin family profile. 28 241 IPR001938 -
Gso16g1012 306 PANTHER OS03G0233200 PROTEIN 1 265 IPR001938 -
Gso16g1012 306 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 1 265 - -
Gso16g1012 306 SUPERFAMILY Osmotin, thaumatin-like protein 29 242 IPR037176 -
Gso16g1012 306 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Gso16g1012 306 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Gso16g1012 306 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Gso16g1012 306 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Gso16g1012 306 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Gso16g1012 306 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1012 Gso-Chr16 27841734 27844530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1012 13 278 Receptor kinase-like Gene Family AT5G38280 43.728 3.78e-75 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1012 - - gmx:100808342 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0403 2 4278873 4281366 Gso16g1012 16 27841734 27844530 GST
Gso11g0655 11 5886991 5888977 Gso16g1012 16 27841734 27844530 PCT
Gso16g1012 16 27841734 27844530 Gso11g0655 11 5886991 5888977 PCT