Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0282 ATGGCTGCGGAAAACGTTGTAGAGTTCACAGACTTACCCGTCAAGAGACCTAGAGAAGAAGAAGAAGAAGAAGAAGAACAAACCAATGGAGTCTCCAACGACGCCGTTTCAACGCTACCCAATGACCCTCAATACCCTGGTATCTCTGCTGTTATTCCCGGTTGGTTCTCAGAAATCAGCCCAATGTGGCCTGGGGAGGCGCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGGAAGTCTGACTATCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTTCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTAGCTCGTCATGCCTCAGTAGAGAAGATAGACATTTGTGAAATAGACAAGATGGTTGTCGATGTCTCTAAACAATTTTTCCCTGATATAGCAGTAGGTTTTGAGGACCCACGTGTAACACTTACTGTTGGTGATGGAGTTGCATTCTTGAAGAATGTTCCAGAAGGAACTTACGATGCAGTTATAGTGGATTCGTCCGACCCTATTGGCCCTGCTCAAGAGCTGTTTGAAAAACCCTTTTTTGCGTCCGTGGCAAAGGCTCTTCGTCCTGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGCACATCATTGAGGACATTGTGGCTAATTGTCGCCAAATATTCAAAGGTTCTATCAACTATGCATGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGTCCTCTTGTTGATTTCAAGCATCCAGTGAATCCTATAAATGAGAATGATAGTCAGCAATCAAGACCATTGAAATTTTACAACTCTGAGATTCATACAGCGGCTTTCTGCTTGCCATCTTTTGCTAAGAGGAAGATTGGTTCTAAAACAAATTGA 1029 0.4373 MAAENVVEFTDLPVKRPREEEEEEEEQTNGVSNDAVSTLPNDPQYPGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHASVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLTVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSINYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPINENDSQQSRPLKFYNSEIHTAAFCLPSFAKRKIGSKTN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0282 342 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 290 IPR030374 -
Gso2g0282 342 PIRSF Spermidine_synth 44 342 IPR030668 GO:0006595
Gso2g0282 342 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 132 145 IPR030373 -
Gso2g0282 342 Gene3D Vaccinia Virus protein VP39 106 342 IPR029063 -
Gso2g0282 342 CDD AdoMet_MTases 131 242 - -
Gso2g0282 342 PANTHER SPERMIDINE SYNTHASE-RELATED 1 342 - -
Gso2g0282 342 Gene3D Spermidine synthase, tetramerisation domain 47 105 IPR037163 -
Gso2g0282 342 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 342 IPR001045 GO:0003824
Gso2g0282 342 TIGRFAM speE: spermidine synthase 55 332 IPR001045 GO:0003824
Gso2g0282 342 Pfam Spermidine synthase tetramerisation domain 54 108 IPR035246 -
Gso2g0282 342 Pfam Spermine/spermidine synthase domain 111 298 - -
Gso2g0282 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 337 IPR029063 -
Gso2g0282 342 MobiDBLite consensus disorder prediction 1 39 - -
Gso2g0282 342 Hamap Polyamine aminopropyltransferase [speE]. 54 338 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0282 Gso-Chr2 3064706 3067848 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0282 K00797 - gmx:100792107 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0282 2 3064706 3067848 Gso2g0282 2 3064706 3067848 ECH
Gso1g0281 1 3316871 3320073 Gso2g0282 2 3064706 3067848 GST
Gso2g0282 2 3064706 3067848 Gso18g1105 18 20054276 20059078 PCT
Gso18g1105 18 20054276 20059078 Gso2g0282 2 3064706 3067848 PCT