Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0281 ATGGCTGCGGAAAACGTTGTTGAGTTCACAGACTTACCCGTCAAGAGGCCAAGAGAAGAAGAAGAAGGAACCAATGGCGTCTCCAACGACGCCGTTTCAGCGCTCCCCAATGACCCTCAATACCCTGGCATCTCTGCGGTTATTCCCGGTTGGTTCTCCGAAATCAGCCCAATGTGGCCCGGGGAGGCACATTCCTTGAAGATGGAAAAGATTTTGTTTCAAGGGAAGTCTGACTATCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAAGTTCTTGTTTTGGATGGAGTCATTCAGCTTACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTGCTGCGGGAAGTAGCTCGCCATGCCTCAGTAGAGAAGATAGACATCTGCGAAATAGACAAGATGGTTGTTGATGTCTCCAAACAATTTTTCCCCGATATAGCAGTAGGTTTTGAGGACCCTCGTGTAACACTTACTGTTGGTGATGGAGTTGCATTTTTGAAGGATGTTCCAGAAGGAACTTACGATGCAGTTATAGTGGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTGTTTGAAAAGCCCTTTTTTGCGTCCGTTGCAAAGGCTCTCCGTCCAGGAGGTGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGCACATCATTGAGGACATTGTGGCTAATTGTCGCCAAATATTCAAAGGTTCTGTCAACTATGCATGGACCACAGTTCCTACATATCCTAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGTCCTCTTGTTGATTTCAAGCATCCAGTGAATCCTTTAAGTGAGAATGATAGTCAACAGTCAAGACCATTGAAATTTTACAATTCTGAGATTCATACAGCGGCTTTCTGTTTGCCATCTTTTGCTAAGAGGAAGATTGGTTCTAAAACAAATTGA 1017 0.4435 MAAENVVEFTDLPVKRPREEEEGTNGVSNDAVSALPNDPQYPGISAVIPGWFSEISPMWPGEAHSLKMEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLTVGDGVAFLKDVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPLSENDSQQSRPLKFYNSEIHTAAFCLPSFAKRKIGSKTN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0281 338 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Gso1g0281 338 CDD AdoMet_MTases 127 238 - -
Gso1g0281 338 PIRSF Spermidine_synth 40 338 IPR030668 GO:0006595
Gso1g0281 338 Pfam Spermine/spermidine synthase domain 107 294 - -
Gso1g0281 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 338 IPR001045 GO:0003824
Gso1g0281 338 TIGRFAM speE: spermidine synthase 51 328 IPR001045 GO:0003824
Gso1g0281 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 286 IPR030374 -
Gso1g0281 338 MobiDBLite consensus disorder prediction 11 25 - -
Gso1g0281 338 Gene3D Vaccinia Virus protein VP39 102 338 IPR029063 -
Gso1g0281 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 333 IPR029063 -
Gso1g0281 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Gso1g0281 338 PANTHER SPERMIDINE SYNTHASE-RELATED 1 338 - -
Gso1g0281 338 Hamap Polyamine aminopropyltransferase [speE]. 50 334 IPR001045 GO:0003824
Gso1g0281 338 Gene3D Spermidine synthase, tetramerisation domain 43 101 IPR037163 -
Gso1g0281 338 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0281 Gso-Chr1 3316871 3320073 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0281 K00797 - gmx:100790506 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0281 1 3316871 3320073 Gso2g0282 2 3064706 3067848 GST
Gso1g0281 1 3316871 3320073 Gso18g1105 18 20054276 20059078 PCT
Gso18g1105 18 20054276 20059078 Gso1g0281 1 3316871 3320073 PCT