Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1105 ATGGCTGATGAGAGCGTCGTTGAGTCCCCAGTGAAGAGGCAGAGAGATGATGATGAAGAAAATGAGGTCTCTGTTTCCATGGATGTGGAGGGTGGCAAAGACCCTCTTAGTAACGGTTTATCATCTGTGATTCCTGGGTGGTTCTCTGAAATTAGTTCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTAGATGGAGTAATTCAGCTAACAGAAAGGGATGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATCGGTGGAGGTGATGGAGGGGTCATACGAGAAGTAGCACACCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAAGATGGTTGTTGATGTCTCCAAACAATACTTCCCTGATGTAGCTGTTGGGTATGATGATCCTCGTGTGACACTTCATATTGGTGATGGAGTTGCATTTCTGAAGGAAGTTCCTGAAGGAACTTATGATGCTGTTATAGTGGATTCATCCGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTCTTTTCGTCAGTTGCAAAGGCTCTTCGTCCAGGTGGAGTTGTGTGCACTCAGGCAGAAAGCATATGGCTTCATATGGATATAATTGAGGACATTGTGGCTAATTGTTGCCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACTGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAATGAGAGTCAGAAGTCAGTAAGACCGCTGAAATTTTACAACTCTGAGATTCATACCGCAGCTTTCTGCTTGCCGTCGTTTGCAAAGAGGAAGATTGGTTCTAAAGCAAATTAA 1008 0.4276 MADESVVESPVKRQRDDDEENEVSVSMDVEGGKDPLSNGLSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVIREVAHHSSVEKIDICEIDKMVVDVSKQYFPDVAVGYDDPRVTLHIGDGVAFLKEVPEGTYDAVIVDSSDPIGPAQELFEKPFFSSVAKALRPGGVVCTQAESIWLHMDIIEDIVANCCQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENESQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKAN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1105 335 MobiDBLite consensus disorder prediction 1 20 - -
Gso18g1105 335 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 45 282 IPR030374 -
Gso18g1105 335 TIGRFAM speE: spermidine synthase 47 325 IPR001045 GO:0003824
Gso18g1105 335 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 330 IPR029063 -
Gso18g1105 335 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 335 IPR001045 GO:0003824
Gso18g1105 335 Hamap Polyamine aminopropyltransferase [speE]. 46 331 IPR001045 GO:0003824
Gso18g1105 335 Pfam Spermidine synthase tetramerisation domain 46 100 IPR035246 -
Gso18g1105 335 MobiDBLite consensus disorder prediction 1 36 - -
Gso18g1105 335 PANTHER SPERMIDINE SYNTHASE-RELATED 1 335 - -
Gso18g1105 335 CDD AdoMet_MTases 145 234 - -
Gso18g1105 335 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 124 137 IPR030373 -
Gso18g1105 335 Pfam Spermine/spermidine synthase domain 103 290 - -
Gso18g1105 335 Gene3D Spermidine synthase, tetramerisation domain 39 97 IPR037163 -
Gso18g1105 335 PIRSF Spermidine_synth 37 335 IPR030668 GO:0006595
Gso18g1105 335 Gene3D Vaccinia Virus protein VP39 98 335 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1105 Gso-Chr18 20054276 20059078 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1105 K00797 - gmx:100776863 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0281 1 3316871 3320073 Gso18g1105 18 20054276 20059078 PCT
Gso2g0282 2 3064706 3067848 Gso18g1105 18 20054276 20059078 PCT
Gso18g1105 18 20054276 20059078 Gso1g0281 1 3316871 3320073 PCT
Gso18g1105 18 20054276 20059078 Gso2g0282 2 3064706 3067848 PCT