Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0098 ATGAATTACTCCCGTCTGACTTCCGGCGGAGGATGGCTTCTCCGGCGACTGTGCACTGCGGCTGAGACTCCCGCGAAAAAGCCAAACCTATATCGAATGTTATCGGCGCTGGACATCACCGGAGGTACCGTGTCGCAAACGTTGGACCAATATATAATGGAAGGCGAAGTCATCAAAAAACAAGAACTCGAACGATGCGTGGAGCAGCTCCGAAAGTATCGCCGATTCCAGCGCGCACTCGAGATAATAGAATGGATGCAGATGAGGAAAGTTAATTTTTCCTGGAATAACTATGCAGTGCAGTTAGATCTTGTGTCCAAAACCAAAGGGGTGGTTGCAGCTGAGAATTTCTTCAGCGGTCTTCCTCCTGCAGCCAAGAACATGTATACCTACGGTGCTCTTCTGAACTGTTACTGTAAGGAACTAATGAAAGACAAGGCATTGAGTCATTTTGACAGAATGAATGAACTGGGTTATGTCACTAATCTGGCTTTCAACAATGTCATGACTCTGTTTATGAAACTGGGTGAACCCGAGAAAGTGGCTCAGCTGGTGGAGCTTATGAAGCAGAGGCGCATTCCCATGTCTGCATTCACATATTATATCTGGATGAACAGCTGCGCCTCTTTGAACGATCTTGATGGGGTGGAGAGAATCTACGAGGAGATGAAAACTGAAGATGAAGACCAAATTGGTTGGCAGACTTACAGCAACCTTGCTTCTATTTATGTTAAGTTTAAGGACTTTGAGAAAGCTGAGATGATGCTTAAGATGCTGGAAAAACAAGTGAAGCCGAAACAGCGTGATGCTTACCATTGCTTGCTTGGCCTTTATGCAGGGACCGGTAATCTTGGGGAGGTTCATAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTCACCAACTTCAGCTATCTTGTTATGCTTAGTACCCTCCGAAGGCTTAATGATATAGAGGGGTTAACAAAATGCTTTAAGGAGTGGGAGGCTAGTTGTGTTAGCTATGATGTGAGGTTGGTTAGTGTCTGTGTTAGTGCTCACTTGAATCAGAACAAGCTGGAAGAAGCTGAATCGGTATTTGAGGAGGCTAGCAGGAGGAGCAAAGGGCCTTTCTTTAGGGTTCGGGAAGAGTTCATGAAGTTTTTCTTGAAGAAGCATCAGTTGGATGCTGCTGTGAGGTACTTGGAGGCAGCGCTTTCAGAAGTCAAGGGTGGTAAATGGCGTCCTTCACCACAAGTTCTTGGGGCTTTTCTGAAGTACTATGAAGAAGAGACGGATGTGGATGGTGTTGATGAGTTGTCCAAGATTCTCAAGGCTAACAATTTCGATGATTCCTGGATTAAAAATCACATTACTGCGTCCGAATTGTCTCCTGAAATTGATCCAGGATTCAAGGAAGATTCTCGAGTCTACCATGCACAGGAGAACTAG 1431 0.4549 MNYSRLTSGGGWLLRRLCTAAETPAKKPNLYRMLSALDITGGTVSQTLDQYIMEGEVIKKQELERCVEQLRKYRRFQRALEIIEWMQMRKVNFSWNNYAVQLDLVSKTKGVVAAENFFSGLPPAAKNMYTYGALLNCYCKELMKDKALSHFDRMNELGYVTNLAFNNVMTLFMKLGEPEKVAQLVELMKQRRIPMSAFTYYIWMNSCASLNDLDGVERIYEEMKTEDEDQIGWQTYSNLASIYVKFKDFEKAEMMLKMLEKQVKPKQRDAYHCLLGLYAGTGNLGEVHRVWNSLKSVSPVTNFSYLVMLSTLRRLNDIEGLTKCFKEWEASCVSYDVRLVSVCVSAHLNQNKLEEAESVFEEASRRSKGPFFRVREEFMKFFLKKHQLDAAVRYLEAALSEVKGGKWRPSPQVLGAFLKYYEEETDVDGVDELSKILKANNFDDSWIKNHITASELSPEIDPGFKEDSRVYHAQEN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0098 476 Gene3D Tetratricopeptide repeat domain 298 438 IPR011990 GO:0005515
Gso2g0098 476 Pfam PPR repeat 129 158 IPR002885 -
Gso2g0098 476 Pfam PPR repeat 235 261 IPR002885 -
Gso2g0098 476 Pfam PPR repeat 164 193 IPR002885 -
Gso2g0098 476 Pfam PPR repeat 198 226 IPR002885 -
Gso2g0098 476 SUPERFAMILY TPR-like 126 401 IPR011990 GO:0005515
Gso2g0098 476 SUPERFAMILY TPR-like 194 299 IPR011990 GO:0005515
Gso2g0098 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Gso2g0098 476 PANTHER OS01G0301500 PROTEIN 3 468 - -
Gso2g0098 476 PANTHER OS12G0527900 PROTEIN 3 468 - -
Gso2g0098 476 Gene3D Tetratricopeptide repeat domain 233 297 IPR011990 GO:0005515
Gso2g0098 476 Gene3D Tetratricopeptide repeat domain 59 232 IPR011990 GO:0005515
Gso2g0098 476 TIGRFAM PPR: pentatricopeptide repeat domain 198 226 IPR002885 -
Gso2g0098 476 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0098 Gso-Chr2 1055894 1057678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0098 30 438 EF-hand Containing Proteins AT1G02150 35.109 4.61e-80 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0098 - - gmx:100791769 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0098 2 1055894 1057678 Gso2g0098 2 1055894 1057678 ECH
Gso2g0098 2 1055894 1057678 Gso10g0102 10 1114342 1116077 GST
Gso2g0098 2 1055894 1057678 Gso19g1642 19 45337202 45340128 PCT
Gso2g0098 2 1055894 1057678 Gso3g1670 3 42585436 42586443 PCT