Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0102 ATGAATTACGCCCGTCTGATTTCCGGCGGAGGATGGCTTCTCCGGCGACTGTGCACGGCGGCTGAGACTCCCGCGAAAAAGCCAAACCTCTATCGAATGTTATCGGCGCTGGACATCACCGGAGGCACCGTGTCGCAAACGTTGGACCAATATATAATGGAAGGCAAAGTCATCAAAAAACCAGAACTCGAGCGGTGCGTCGAGCAGCTCCGAAAGTATCGCCGATTCCAGCACGCACTCGAGATAATAGAATGGATGGAGATAAGAAAAGTTAATTTTTCCTGGAGTAACTATGCTGTGCAATTAGATCTTGTGTCCAAAACCAAAGGGGTGGATGCTGCGGAGAATTTTTTCGGCGGTCTTCCTCCTCCAGCCAAGAACAGGTATACCTACGGTGCTCTTCTGAACTGTTACTGTAAGGAACTAATGAAAGACAAGGCATTGAGTCATTTTGACACCATGGATGAATTGGGTTATGTCACTAATCTGGCTTTCAACAATGTCATGACTCTGTTTATGAAACTGGGTGAACCCCAGAAAGTGCCTCAGCTAGTGGAGCTTATGAAAAAGAGGACCATTCCCATGTCCCCATTCACATATCATATCTGGATGAACAGCTGCGCCTCTTCAAACGATCTTGGTGGGGCGGAGAGAGTCTATGAGGAGATGAAAACTGAAAATGAAGGCCAAATTGGTTGGCACACTTACAGCAACCTTGCTTCTATTTATGTAAAGTTTAAGGACTTTGAGAAAGCTGAGATGATGCTTAAGATGCTGGAGGAACAAGTGAAGCCGAAGCAGCGTGATGCTTACCATTGCTTGCTTGGCCTTTATGCAGGGACTGGTAATCTTGGGGAGGTTCATAGAGTGTGGGATTCCCTCAAGTCTGTCTCCCCTGTCACCAACTTCAGCTATCTTGTTATGCTTAGTACCCTCCGAAGGCTTAATGATATGGAGGGGTTAACAAAATGCTTTAAGGAGTGGGAGGCAAGTTGTGTTAGCTATGATGCGAGGTTGGTTAGTGTCTGTGTTAGTGCTCACTTGAATCAGAACATGTTGGAAGAAGCTGAATTGGTATTTGAGGAGGCTAGCAGGAGGAGCAAAGGGCCTTTCTTTAGGGTTCGGGAAGAGTTCATGAAGTTTTTCTTGAAGAAACATGAGTTGGATGCTGCTGTGAGGCACTTGGAGGCAGCGCTTTCAGAAGTCAAGGGTGATAAATGGCGTCCTTCACCACAAGTTGTTGGGGCTTTTCTCAAGTACTATGAAGAAGAGACGGATGTGGATGGTGTTGATGAGTTGTCCAAGATTCTCAAGGCTAACAATTTTGATGATTCCTGGATTAAAAGTTGCATTACTGCATCCAAATCGTCTCCTGAAATTGATCCAGGAATGAAGGAAGATTCTCAAGTCTACCATGCGCAGGAGAACTAG 1431 0.4591 MNYARLISGGGWLLRRLCTAAETPAKKPNLYRMLSALDITGGTVSQTLDQYIMEGKVIKKPELERCVEQLRKYRRFQHALEIIEWMEIRKVNFSWSNYAVQLDLVSKTKGVDAAENFFGGLPPPAKNRYTYGALLNCYCKELMKDKALSHFDTMDELGYVTNLAFNNVMTLFMKLGEPQKVPQLVELMKKRTIPMSPFTYHIWMNSCASSNDLGGAERVYEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEMMLKMLEEQVKPKQRDAYHCLLGLYAGTGNLGEVHRVWDSLKSVSPVTNFSYLVMLSTLRRLNDMEGLTKCFKEWEASCVSYDARLVSVCVSAHLNQNMLEEAELVFEEASRRSKGPFFRVREEFMKFFLKKHELDAAVRHLEAALSEVKGDKWRPSPQVVGAFLKYYEEETDVDGVDELSKILKANNFDDSWIKSCITASKSSPEIDPGMKEDSQVYHAQEN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0102 476 Pfam PPR repeat 129 158 IPR002885 -
Gso10g0102 476 Pfam PPR repeat 235 261 IPR002885 -
Gso10g0102 476 Pfam PPR repeat 164 191 IPR002885 -
Gso10g0102 476 Pfam PPR repeat 198 226 IPR002885 -
Gso10g0102 476 MobiDBLite consensus disorder prediction 460 476 - -
Gso10g0102 476 MobiDBLite consensus disorder prediction 455 476 - -
Gso10g0102 476 SUPERFAMILY TPR-like 194 299 IPR011990 GO:0005515
Gso10g0102 476 PANTHER OS01G0301500 PROTEIN 3 468 - -
Gso10g0102 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Gso10g0102 476 PANTHER OS12G0527900 PROTEIN 3 468 - -
Gso10g0102 476 TIGRFAM PPR: pentatricopeptide repeat domain 198 226 IPR002885 -
Gso10g0102 476 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Gso10g0102 476 Gene3D Tetratricopeptide repeat domain 60 226 IPR011990 GO:0005515
Gso10g0102 476 Gene3D Tetratricopeptide repeat domain 233 457 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0102 Gso-Chr10 1114342 1116077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0102 30 438 EF-hand Containing Proteins AT1G02150 35.109 3.73e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0102 - - gmx:100781679 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0098 2 1055894 1057678 Gso10g0102 10 1114342 1116077 GST
Gso10g0102 10 1114342 1116077 Gso19g1642 19 45337202 45340128 PCT
Gso10g0102 10 1114342 1116077 Gso3g1670 3 42585436 42586443 PCT