Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1393 ATGAAAATGGCGCGTGGCAAGAATCTGTTCCTCCAAATTCTGTGGTGTTTTTCCTTGATCGGTCTTAGTTCCCAAGCACAGAATTACACTTTTGTTGTGAGAGAGGCCAAGTATACAAGACTCTGCTCCACAAAAAGCATATTGACTGTGAATGGAGAATTTCCCGGACCAACTATTAGAGCCAACAGAGGAGACACAATTTTTATAGATGTTTACAACAAGGGCAACTTCAATATTACTTTACACTGGCATGGGGTGAAGCAGCCAAGGAATCCATGGACAGATGGCCCTTCATACATCACTCAGTGCCCAATCCAACCTGGAAGGAAATTCACACAGAGGTTGATTTTTACTTTCGAGGAAGGGACCATATGGTGGCATGCTCATAGTGAATGGTTAAGAGCCACTGTCTATGGTGCTATCCACATATATCCAAATAAGAATAATCCCTACCCTTTTCCCCAACCCGATGCAGAGATTCCCATCATATTTGGAGAATGGTGGACGAGTGACGTCAACGAGGTCTTCAGACAATCTATGGAAACTGGAGGAGCCCCAAACGTATCTGATGCTCTCACTATAAATGGTCAACCTGGGGATCTGTTCCCTTGCTCAAGTCCAGAAACGTTCAAGCTAAATGTAGAGCAAGGCAAGACTTATCATCTCCGGGTTATCAACGCGGCACTGAATCTCATTCTCTTCTTCTCTGTTTCCCAACACAACCTCACTGTTGTTGGTGCTGATGCTGTGTACACAAGGCCACTGACAAGGGAATACATTTGCATATCACCGGGACAAGCAATGGATGTGTTGTTGCATGCCAACCAAGATCCTGGTCACTATTATCTGGCTGCAGCGGCATATTCAAGTGGTGTTGGTGTTGCCTTTGATAACACCACAACCACTGCTAGAGTTGAGTACAGTGGCAATTACACTCCACCTTCATCTCCTTCATTGCCTAACCTTCCCAACTTCAACGACACGCGTGCGGCGTTGAACTTCATTACAAACTTGAGAGGCTTACCTGAGAGAGCCCCCAGCCATGTCCCAACAAACATCACAACTCAAATAGTAACCACTATTTCAGTTAACACTTTGCCATGCCCTAATGGCAGAAACGACTGCCAGGGGCTAAATGGAACCATTTTCTCTGCTAGCATGAACAACATAAGCTTTCGAATCCCCACCATTGACATACTAAAAGCCTATTACTACCATATCAACGGGGTATACGAACCTGGATTTCCAACATTTCCACCGTTTATATTTAACTTCACTGGGGATTTTTTGCCTATAACACTGAATACACCAAAGCAAGGGACTAGGGTTAATGTGCTGAACTATGGTGCAACAGTTGAAATTGTTTTCCAAGGGACAAACCTTGTTGGCGGGATAGACCATCCCATCCATCTCCATGGCTACAGTTTCCATGTTGTTGGATATGGGCTAGGCAATTTTAACCAAAGCGTGGATCCCATGAATTTCAATCTCGTTGATCCTCCTTATTTGAATACAGTGATAGTGCCTATAAATGGCTGGGCTGCCATTAGGTTCGAGGCTGTAAACCCTGGAGTATGGTTTATGCACTGCCATCTAGAACGCCACCAATCTTGGGGTATGGAGACAGTTTTTATTGTGAAGGATGGAGAGTCTGAAAATCTAAGATTGCCACCACCACCGCCAGACATGCCCCCATGTTGA 1701 0.448 MKMARGKNLFLQILWCFSLIGLSSQAQNYTFVVREAKYTRLCSTKSILTVNGEFPGPTIRANRGDTIFIDVYNKGNFNITLHWHGVKQPRNPWTDGPSYITQCPIQPGRKFTQRLIFTFEEGTIWWHAHSEWLRATVYGAIHIYPNKNNPYPFPQPDAEIPIIFGEWWTSDVNEVFRQSMETGGAPNVSDALTINGQPGDLFPCSSPETFKLNVEQGKTYHLRVINAALNLILFFSVSQHNLTVVGADAVYTRPLTREYICISPGQAMDVLLHANQDPGHYYLAAAAYSSGVGVAFDNTTTTARVEYSGNYTPPSSPSLPNLPNFNDTRAALNFITNLRGLPERAPSHVPTNITTQIVTTISVNTLPCPNGRNDCQGLNGTIFSASMNNISFRIPTIDILKAYYYHINGVYEPGFPTFPPFIFNFTGDFLPITLNTPKQGTRVNVLNYGATVEIVFQGTNLVGGIDHPIHLHGYSFHVVGYGLGNFNQSVDPMNFNLVDPPYLNTVIVPINGWAAIRFEAVNPGVWFMHCHLERHQSWGMETVFIVKDGESENLRLPPPPPDMPPC* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1393 566 PANTHER LACCASE-15 32 566 - -
Gso20g1393 566 CDD CuRO_3_LCC_plant 410 549 IPR034289 GO:0005507
Gso20g1393 566 ProSitePatterns Multicopper oxidases signature 2. 529 540 IPR002355 GO:0005507
Gso20g1393 566 Pfam Multicopper oxidase 33 147 IPR011707 GO:0005507
Gso20g1393 566 PANTHER MULTI-COPPER OXIDASE 32 566 IPR045087 -
Gso20g1393 566 Pfam Multicopper oxidase 160 310 IPR001117 -
Gso20g1393 566 SUPERFAMILY Cupredoxins 23 169 IPR008972 -
Gso20g1393 566 Gene3D - 156 342 IPR008972 -
Gso20g1393 566 TIGRFAM laccase: laccase 25 566 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso20g1393 566 Pfam Multicopper oxidase 434 549 IPR011706 GO:0005507|GO:0016491
Gso20g1393 566 CDD CuRO_2_LCC_plant 160 307 IPR034285 -
Gso20g1393 566 Gene3D - 372 566 IPR008972 -
Gso20g1393 566 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Gso20g1393 566 Gene3D - 18 145 IPR008972 -
Gso20g1393 566 SUPERFAMILY Cupredoxins 153 343 IPR008972 -
Gso20g1393 566 ProSitePatterns Multicopper oxidases signature 1. 524 544 IPR033138 -
Gso20g1393 566 SUPERFAMILY Cupredoxins 377 566 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1393 Gso-Chr20 44090735 44094958 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1393 K05909 K19791 gmx:100788301 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1393 20 44090735 44094958 Gso10g1963 10 46642565 46646538 GST
Gso16g1276 16 32115277 32118841 Gso20g1393 20 44090735 44094958 PCT
Gso20g1393 20 44090735 44094958 Gso16g1276 16 32115277 32118841 PCT