Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1963 ATGAAAATGACGTGTGGCAAGAATCTGTTCCTCCAAATTCTGTGGTGTTTTTCCTTGATCGGTCTTAGTTCCCAAGCACAGAATTACACTTTTGTTGTGACAGAGGTCAAGTACACAAGACTCTGTTCCACAAAAAACATATTGACTGTGAATGGAGAATTTCCAGGACCAACTATCAGAGCCACCAGGGGAGACACAATCTTTGTAGATGTTTACAACAAGGGCAACTTCAATATTACTTTACACTGGCATGGGGTGAAGCAGCCAAGGAATCCATGGACAGATGGTCCTTCATACATTACTCAGTGCCCAATCCAACCTGGAAGGAAATTCACACAGAGGTTGATTTTTACTTTCGAGGAAGGGACCATATGGTGGCATGCTCATAGTGAATGGTTAAGAGCCACTGTCTATGGTGCTATCTATATCTATCCCAATAAAAATACTCCTTACCCTTTTCCCCAACCTGATGCAGAGATTCCCATCATATTTGGAGAATGGTGGACGAGTGATGTCAACGAGGTCTTCAGACAATCTATGGAAAGTGGAGCAGCCCCAAGCGTATCTGATGCTCTCACTATCAATGGTCAACCCGGGGATCTGTTACCTTGCTCAAGTCCAGAAACATTCAAGTTAAATGTAGAGCAAGGAAAGACTTATCATCTCCGTGTTATCAACGCGGCAGTGAATCTCATTCTCTTCTTCTCTGTTTCCCAACACAACCTCACTGTTGTTGCTGCTGATGCTGTGTACTCAAGGCCATTCACAAGGGATTATATTTGCATATCACCGGGACAAGCAATGGATGTATTGCTGCATGCCAATCAAGAACCTGGTCACTATTATTTGGCTGCAAGGGCATATTCAAGTGGTGTTGGAGTAGCCTTTGATAACACAACAACCACTGCTAGAATAGAGTACAGTGGCAATTACACTCCACCTTCATCTCCTTCATTGCCTAATCTTCCAGACTTTAACGACACCCGTGCGGCATTGGACTTCATTACAAACCTAAGAGGCTTACCTGAGAGAGCCCCCAGTCAGGTCCCAAAAAACATCACAACTCAAATAGTGACCACTATTTCTGTTAACACTTTGCCATGCCCAAATGGCAGAACCTGTCAGGGACCAAATGGAACCATTTTCGCTGCTAGCATGAACAACATAAGTTTTGATACCCCCAACATTGACATACTAAAAGCTTATTACTATCATATCAATGGGGTATTTAAACCGGGATTTCCTAGATTTCCACCCTTTATATTTAACTTCACTGGGGATTTTTTGCCTATAACATTGAACACACCAAAGCAAGGGACTAGGGTTAATGTGTTGAACTATGGTGCAACAGTTGAAATTGTTTTCCAAGGGACAAACCTTGTTGGAGGGATAGACCATCCCATCCATCTCCATGGCTACAGTTTCCATGTTGTTGGATATGGGTTAGGCAATTTTAACCAAAGCGTGGACCCCATGAATTTCAATCTTGTTGATCCTCCTTATTTGAATACAGTGGTTGTGCCTATAAATGGATGGGCTGCCATTAGATTCGAGGCTGTAAACCCTGGAGTATGGTTTATGCACTGCCATCTAGAACGCCACCAATCTTGGGGTATGGAGACAGTTTTTATTGTGAAGGATGGAGAGTCTGAAAATCTAAGATTGCCACCACCACCGCCAGACATGCCCCCATGTTGA 1698 0.4329 MKMTCGKNLFLQILWCFSLIGLSSQAQNYTFVVTEVKYTRLCSTKNILTVNGEFPGPTIRATRGDTIFVDVYNKGNFNITLHWHGVKQPRNPWTDGPSYITQCPIQPGRKFTQRLIFTFEEGTIWWHAHSEWLRATVYGAIYIYPNKNTPYPFPQPDAEIPIIFGEWWTSDVNEVFRQSMESGAAPSVSDALTINGQPGDLLPCSSPETFKLNVEQGKTYHLRVINAAVNLILFFSVSQHNLTVVAADAVYSRPFTRDYICISPGQAMDVLLHANQEPGHYYLAARAYSSGVGVAFDNTTTTARIEYSGNYTPPSSPSLPNLPDFNDTRAALDFITNLRGLPERAPSQVPKNITTQIVTTISVNTLPCPNGRTCQGPNGTIFAASMNNISFDTPNIDILKAYYYHINGVFKPGFPRFPPFIFNFTGDFLPITLNTPKQGTRVNVLNYGATVEIVFQGTNLVGGIDHPIHLHGYSFHVVGYGLGNFNQSVDPMNFNLVDPPYLNTVVVPINGWAAIRFEAVNPGVWFMHCHLERHQSWGMETVFIVKDGESENLRLPPPPPDMPPC* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1963 565 SUPERFAMILY Cupredoxins 345 565 IPR008972 -
Gso10g1963 565 SUPERFAMILY Cupredoxins 153 342 IPR008972 -
Gso10g1963 565 Gene3D - 372 565 IPR008972 -
Gso10g1963 565 ProSitePatterns Multicopper oxidases signature 1. 523 543 IPR033138 -
Gso10g1963 565 Gene3D - 18 145 IPR008972 -
Gso10g1963 565 Pfam Multicopper oxidase 433 548 IPR011706 GO:0005507|GO:0016491
Gso10g1963 565 CDD CuRO_3_LCC_plant 409 548 IPR034289 GO:0005507
Gso10g1963 565 PANTHER LACCASE-15 32 565 - -
Gso10g1963 565 PANTHER MULTI-COPPER OXIDASE 32 565 IPR045087 -
Gso10g1963 565 Pfam Multicopper oxidase 33 147 IPR011707 GO:0005507
Gso10g1963 565 ProSitePatterns Multicopper oxidases signature 2. 528 539 IPR002355 GO:0005507
Gso10g1963 565 SUPERFAMILY Cupredoxins 23 169 IPR008972 -
Gso10g1963 565 CDD CuRO_2_LCC_plant 160 307 IPR034285 -
Gso10g1963 565 Gene3D - 156 342 IPR008972 -
Gso10g1963 565 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Gso10g1963 565 TIGRFAM laccase: laccase 25 565 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso10g1963 565 Pfam Multicopper oxidase 160 310 IPR001117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1963 Gso-Chr10 46642565 46646538 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1963 K05909 K19791 gmx:100793354 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1963 10 46642565 46646538 Gso10g1963 10 46642565 46646538 ECH
Gso20g1393 20 44090735 44094958 Gso10g1963 10 46642565 46646538 GST
Gso16g1276 16 32115277 32118841 Gso10g1963 10 46642565 46646538 PCT
Gso10g1963 10 46642565 46646538 Gso16g1276 16 32115277 32118841 PCT