Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1276 ATGAAAATGTGGCTTGGCAAGAAAATTATCTTCCTTCAAACTCTGCTTTGTTTTTCCATAGTTGGAACCAATTCCCATGGATTGAAGGAATACCATTTTGTTCTGAAAGAAGCTCATTATAGAAGACTCTGCAGCTCAAAACCCATATTGACAGTGAATGGACAATTTCCAGGGCCAACTGTTAGAGCCTACTATGGTGAAACGATATATGTCAATGTTCACAACAAGGGAAAATACAACATCACCTTGCACTGGCATGGAGTGAAACAACCAAGGAATCCATGGTCAGATGGCCCTGAATACATCACCCAGTGCCCCATCAAACCTGGTGGGAAATTCAGGCAGATGTTGATTTTTTCTATTGAGGAAGGAACCATATGGTGGCATGCTCATAGTGACTGGGCAAGAGCCACTGTCCATGGAGCTATCTATATTTATCCAAGAAAGGGTGAATCCTACCCTTTTCCCACACCTGATGAAGAAGTGCCTATTGTATTAGGAGAATGGTGGAAGAGTGATGTCAGCGATGTGTATGAGGAATTTCTCAGAAATGGAGGATCCCCAAATGAATCTGATGCTATCACAATAAATGGTCAACCTGGTGATCTCTATCCTTGCTCCAAATCAGAAACATTCAAGTTAAATGTGCACTATGGCAAGACTTATCATCTGCGCATGGTCAATGCTGCAATGAATCTCGTTCTCTTTTTTGCCGTTTCAAAGCACAATCTCACAGTTGTTGGTGTTGATAGTGCCTACTCTAAGCCATTAACAAGAGATTACATATGCATAGCTCCAGGACAAACAGCTGATGTATTATTGCATGCCAACCAAGAGCCTAATGACTACTACATGGCTGCAAGGGCATATTCAAGTGCACTTGGAGTTGCCTTTAATAATGGCATAACCACAGCTAGGATCCACTATCATGAGAATCATGCTCCAAACAAATCTCCTTCATTACCTTATCTCCCTCTTTACAACGACACAAAAGCAGTTTTTGACTACTATGTTAGCATTAAGGGCTTAAATGAAGCAGACCCCTATCAAGTCCCTACAAATATCACCACTCATATGCTAACCACCCTTTCAATTAACACATTTCCATGCCCTGAAAACCAAACCTGTGCAGGACCAAATGGAACACGTTTAGCTTCTAGCGTGAACAACATAAGTTTTGAAAACCCTACCATTGACATACTAGAAGCCTATTACTACCACATCAAAGGGGTGTATCACAAGGGGTTACCAAAATTTCCTCCTTTGAAATTTGACTTTAATGCAGAGTATTTGCCTCTAGAACTTCAGATACCAAAGAAAGGAACCAAGGTGGCTGTTATTAAATTTGGTTCAACAGTTGAACTTGTTTTTCAAGGGACAAATTTGGTTACTGGGATAGACCATCCTATGCATCTGCATGGCACTAGTTTCTTTGCTGTTGGATATGGGTTTGGGAATTTTGATAAACACAAGGACCGCAAGACATACAATCTCATTGATCCTCCCCTTATGAATACAATACTAGTGCCCAAGAATGGTTGGGCCAGCATAAGGTATAGGGCTTCTAACCCAGGAGTGTGGTTTGTGCATTGCCATCTAGACCGCCACCTCTCTTGGGGCATGGAGACTGTGTTTATTGTGACGAATGGGGAAGGAGATGCTGAAATACTACCTCCTCCTCCAGATATGCCCCAGTGTTGA 1701 0.4186 MKMWLGKKIIFLQTLLCFSIVGTNSHGLKEYHFVLKEAHYRRLCSSKPILTVNGQFPGPTVRAYYGETIYVNVHNKGKYNITLHWHGVKQPRNPWSDGPEYITQCPIKPGGKFRQMLIFSIEEGTIWWHAHSDWARATVHGAIYIYPRKGESYPFPTPDEEVPIVLGEWWKSDVSDVYEEFLRNGGSPNESDAITINGQPGDLYPCSKSETFKLNVHYGKTYHLRMVNAAMNLVLFFAVSKHNLTVVGVDSAYSKPLTRDYICIAPGQTADVLLHANQEPNDYYMAARAYSSALGVAFNNGITTARIHYHENHAPNKSPSLPYLPLYNDTKAVFDYYVSIKGLNEADPYQVPTNITTHMLTTLSINTFPCPENQTCAGPNGTRLASSVNNISFENPTIDILEAYYYHIKGVYHKGLPKFPPLKFDFNAEYLPLELQIPKKGTKVAVIKFGSTVELVFQGTNLVTGIDHPMHLHGTSFFAVGYGFGNFDKHKDRKTYNLIDPPLMNTILVPKNGWASIRYRASNPGVWFVHCHLDRHLSWGMETVFIVTNGEGDAEILPPPPDMPQC* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1276 566 Pfam Multicopper oxidase 160 312 IPR001117 -
Gso16g1276 566 Pfam Multicopper oxidase 437 550 IPR011706 GO:0005507|GO:0016491
Gso16g1276 566 CDD CuRO_2_LCC_plant 162 309 IPR034285 -
Gso16g1276 566 Gene3D - 158 345 IPR008972 -
Gso16g1276 566 CDD CuRO_1_LCC_plant 31 147 IPR034288 GO:0005507
Gso16g1276 566 PANTHER LACCASE-15 34 564 - -
Gso16g1276 566 SUPERFAMILY Cupredoxins 28 171 IPR008972 -
Gso16g1276 566 TIGRFAM laccase: laccase 29 566 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gso16g1276 566 Gene3D - 17 147 IPR008972 -
Gso16g1276 566 PANTHER MULTI-COPPER OXIDASE 34 564 IPR045087 -
Gso16g1276 566 SUPERFAMILY Cupredoxins 378 566 IPR008972 -
Gso16g1276 566 SUPERFAMILY Cupredoxins 155 333 IPR008972 -
Gso16g1276 566 ProSitePatterns Multicopper oxidases signature 2. 530 541 IPR002355 GO:0005507
Gso16g1276 566 Gene3D - 370 566 IPR008972 -
Gso16g1276 566 ProSitePatterns Multicopper oxidases signature 1. 525 545 IPR033138 -
Gso16g1276 566 Pfam Multicopper oxidase 37 149 IPR011707 GO:0005507
Gso16g1276 566 CDD CuRO_3_LCC_plant 411 550 IPR034289 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1276 Gso-Chr16 32115277 32118841 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1276 K05909 K19791 gmx:100788550 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1276 16 32115277 32118841 Gso20g1393 20 44090735 44094958 PCT
Gso16g1276 16 32115277 32118841 Gso10g1963 10 46642565 46646538 PCT
Gso20g1393 20 44090735 44094958 Gso16g1276 16 32115277 32118841 PCT
Gso10g1963 10 46642565 46646538 Gso16g1276 16 32115277 32118841 PCT